Systems neuroscience studies involving in-vivo models often require realtime data processing. In these studies, many events must be monitored and processed quickly, including behavior of the subject (e.g., movement of a limb) or features of neural data (e.g., a neuron transmitting an action potential). Unfortunately, most realtime platforms are proprietary, require specific architectures, or are limited to low-level programming languages. Here we present a hardware-independent, open-source realtime computation platform that supports high-level programming. The resulting platform, LiCoRICE, can process on order 10e10 bits/sec of network data at 1 ms ticks with 18.2 µs jitter. It connects to various inputs and outputs (e.g., DIO, Ethernet, database logging, and analog line in/out) and minimizes reliance on custom device drivers by leveraging peripheral support via the Linux kernel. Its modular architecture supports model-based design for rapid prototyping with C and Python/Cython and can perform numerical operations via BLAS/LAPACK-optimized NumPy that is statically compiled via Numba’s pycc. LiCoRICE is not only suitable for systems neuroscience research, but also for applications requiring closed-loop realtime data processing from robotics and control systems to interactive applications and quantitative financial trading.

Brain-computer interfaces (BCIs) record brain activity and translate the information into useful control signals. They can be used to restore function to people with paralysis by controlling end effectors such as computer cursors and robotic limbs. Communication neural prostheses are BCIs that control user interfaces on computers or mobile devices. Here we demonstrate a communication prosthesis by simulating a typing task with two rhesus macaques implanted with electrode arrays. The monkeys used two of the highest known performing BCI decoders to type out words and sentences when prompted one symbol/letter at a time. On average, Monkeys J and L achieved typing rates of 10.0 and 7.2 words per minute (wpm), respectively, copying text from a newspaper article using a velocity-only two dimensional BCI decoder with dwell-based symbol selection. With a BCI decoder that also featured a discrete click for key selection, typing rates increased to 12.0 and 7.8 wpm. These represent the highest known achieved communication rates using a BCI. We then quantified the relationship between bitrate and typing rate and found it approximately linear: typing rate in wpm is nearly three times bitrate in bits per second. We also compared the metrics of achieved bitrate and information transfer rate and discuss their applicability to real-world typing scenarios. Although this study cannot model the impact of cognitive load of word and sentence planning, the findings here demonstrate the feasibility of BCIs to serve as communication interfaces and represent an upper bound on the expected achieved typing rate for a given BCI throughput.

Brain-machine interface (BMI) systems convert neural signals from motor regions of the brain into control signals to guide prosthetic devices. The ultimate goal of BMIs is to improve the quality of life for people with paralysis by providing direct neural control of prosthetic arms or computer cursors. While considerable research over the past 15 years has led to compelling BMI demonstrations, there remain several challenges to achieving clinically viable BMI systems. In this review, we focus on the challenge of increasing BMI performance and robustness. We review and highlight key aspects of intracortical BMI decoder design, which is central to the conversion of neural signals into prosthetic control signals, and discuss emerging opportunities to improve intracortical BMI decoders. This is one of the primary research opportunities where information systems engineering can directly impact the future success of BMIs.

Motor prostheses aim to restore function to disabled patients. Despite compelling proof of concept systems, barriers to clinical translation remain. One challenge is to develop a low-power, fully-implantable system that dissipates only minimal power so as not to damage tissue. To this end, we implemented a Kalman-filter based decoder via a spiking neural network (SNN) and tested it in brain-machine interface (BMI) experiments with a rhesus monkey. The Kalman filter was trained to predict the arm’s velocity and mapped on to the SNN using the Neural Engineer- ing Framework (NEF). A 2,000-neuron embedded Matlab SNN implementation runs in real-time and its closed-loop performance is quite comparable to that of the standard Kalman filter. The success of this closed-loop decoder holds promise for hardware SNN implementations of statistical signal processing algorithms on neuromorphic chips, which may offer power savings necessary to overcome a major obstacle to the successful clinical translation of neural motor prostheses.

Neural prosthetics for motor systems is a rapidly growing field with the potential to provide treatment for amputees or patients suffering from neurological injury and disease. To determine whether a physically active patient such as an amputee can take advantage of these systems, we seek to develop an animal model of freely moving humans. Therefore, we have developed and tested HermesC, a system for recording neural activity from electrode arrays implanted in rhesus monkeys and transmitting this data wirelessly. This system is based on the integrated neural interface (INI) microchip, which amplifies, digitizes, and transmits neural data across a ~900 MHz wireless channel. The wireless transmission has a range of ~4 m in free space. All together, this device consumes 11.7 mA from a 4.0 V lithium ion battery pack for a total of 46.8 mW. To test the performance, the device was used to record and telemeter one channel of broadband neural data at 15.7 kSps from one monkey doing various physical activities in a home cage, such as eating, climbing and swinging. The in-band noise of the recorded neural signal is 34 muVrms, which is low enough to allow the detection of neural units on an active electrode. This system can be readily upgraded to use future generations of the INI chip, with circuits providing 96 channels of programmable threshold crossing event data.

We present experimental results from an integrated circuit designed for wireless neural recording applications. The chip, which was fabricated in a 0.6-mum 2P3M BiCMOS process, contains 100 amplifiers and a 10-bit ADC and 902-928 MHz FSK transmitter. Neural signals from one amplifier are sampled by the ADC at 15.7 kSps and telemetered over the FSK wireless data link. Power, clock, and command signals are sent to the chip wirelessly over a 2.765-MHz inductive (coil-to-coil) link. The chip is capable of operating with only two off-chip components: a power receive coil and a 100-nF capacitor.

Wireless-enabled processor modules intended for communicating low-frequency phenomena (i.e., temperature, humidity, and ambient light) have been enabled to acquire and transmit multiple biological signals in real time, which has been achieved by using computationally efficient data acquisition, filtering, and compression algorithms, and interfacing the modules with biological interface hardware. The sensor modules can acquire and transmit raw biological signals at a rate of 32 kb/s, which is near the hardware limit of the modules. Furthermore, onboard signal processing enables one channel, sampled at a rate of 4000 samples/s at 12-bit resolution, to be compressed via adaptive differential-pulse-code modulation (ADPCM) and transmitted in real time. In addition, the sensors can be configured to filter and transmit individual time-referenced "spike" waveforms, or to transmit the spike height and width for alleviating network traffic and increasing battery life. The system is capable of acquiring eight channels of analog signals as well as data via an asynchronous serial connection. A back-end server archives the biological data received via networked gateway sensors, and hosts them to a client application that enables users to browse recorded data. The system also acquires, filters, and transmits oxygen saturation and pulse rate via a commercial-off-the-shelf interface board. The system architecture can be configured for performing real-time nonobtrusive biological monitoring of humans or rodents. This paper demonstrates that low-power, computational, and bandwidth-constrained wireless-enabled platforms can indeed be leveraged for wireless biosignal monitoring.