BACKGROUND: An adequate and expressive ontological representation of biological organisms and their parts requires formal reasoning mechanisms for their relations of physical aggregation and containment. RESULTS: We demonstrate that the proposed formalism allows to deal consistently with "role propagation along non-taxonomic hierarchies", a problem which had repeatedly been identified as an intricate reasoning problem in biomedical ontologies. CONCLUSION: The proposed approach seems to be suitable for the redesign of compositional hierarchies in (bio)medical terminology systems which are embedded into the framework of the OBO (Open Biological Ontologies) Relation Ontology and are using knowledge representation languages developed by the Semantic Web community.

We introduce a light-weight interlingua for a cross-language document retrieval system in the medical domain. It is composed of equivalence classes of semantically primitive, language-specific subwords which are clustered by interlingual and intralingual synonymy. Each subword cluster represents a basic conceptual entity of the language-independent interlingua. Documents, as well as queries, are mapped to this interlingua level on which retrieval operations are performed. Evaluation experiments reveal that this interlingua-based retrieval model outperforms a direct translation approach.

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The bottleneck for dictionary-based cross-language information retrieval is the lack of comprehensive dictionaries, in particular for many different languages. We here introduce a methodology by which multilingual dictionaries (for Spanish and Swedish) emerge automatically from simple seed lexicons. These seed lexicons are automatically generated, by cognate mapping, from (previously manually constructed) Portuguese and German as well as English sources. Lexical and semantic hypotheses are then validated and new ones iteratively generated by making use of co-occurrence patterns of hypothesized translation synonyms in parallel corpora. We evaluate these newly derived dictionaries on a large medical document collection within a cross-language retrieval setting.

We introduce a methodology for automating the maintenance and growth of domain-specific concept taxonomies and grammatical class hierarchies simultaneously, based on knowledge capture from natural language texts. The assimilation process is centered around the linguistic and conceptual `quality' of various forms of evidence underlying the generation, assessment and on-going refinement of lexical and concept hypotheses. On the basis of the strength of evidence, hypotheses are ranked according to plausibility, and the most reasonable ones are selected for assimilation into the given lexical class hierarchy and domain ontology.