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Kivanç Köse

dblp:54/8026 · DBLP profile ↗
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10ranked-venue papers
4as first author
2since 2021 · last 2023
0000-0003-3185-2639ORCID · verified

Domains — the database's venue-derived domains; a paper can count in several

Graphics, computer vision, multimedia, augmented reality and games · 7 · 2 first-authorApplied, interdisciplinary, general and emerging computing · 3 · 2 first-author · 1 since 2021Artificial intelligence and machine learning · 1 · 1 since 2021

Expertise — from the expertise taxonomy: the topics of the expert's papers under the CCF categories. A weight counts papers with recency: 1 for a paper about the topic, 0.3 when the topic is its context, halved every five years.

Artificial intelligence
1 paper
Deep learning architectures and training · 67% Trustworthy machine learning · 33%
Interdisciplinary, comprehensive, and emerging computing
1 paper
Medical and health informatics · 67% Bioinformatics and computational biology · 33%
Computer graphics and multimedia
1 paper
Multimedia analysis and retrieval · 100%

Topics — the 8 heaviest of 8, each with the papers that count most for it

TopicWeightPapersLastEvidence papers
Machine learning › Deep learning architectures and training
feature interaction
0.712023
SmoothHess: ReLU Network Feature Interactions via Stein's Lemma · NeurIPS 2023
Machine learning › Trustworthy machine learning
interpretability
0.712023
SmoothHess: ReLU Network Feature Interactions via Stein's Lemma · NeurIPS 2023
Machine learning › Deep learning architectures and training
ReLU networks
0.712023
SmoothHess: ReLU Network Feature Interactions via Stein's Lemma · NeurIPS 2023
Medical and health informatics › medical imaging › medical image analysis
3d segmentation
0.312017
A Marked Poisson Process Driven Latent Shape Model for 3D Segmentation of Reflectance Confocal Microscopy Image Stacks of Human Skin · IEEE Trans. Image Process. 2017
Medical and health informatics › medical imaging
medical image analysis
0.312017
A Marked Poisson Process Driven Latent Shape Model for 3D Segmentation of Reflectance Confocal Microscopy Image Stacks of Human Skin · IEEE Trans. Image Process. 2017
Bioinformatics and computational biology › bioimage informatics › bioimage analysis › microscopy image analysis
microscopy image segmentation
0.312017
A Marked Poisson Process Driven Latent Shape Model for 3D Segmentation of Reflectance Confocal Microscopy Image Stacks of Human Skin · IEEE Trans. Image Process. 2017
Multimedia analysis and retrieval
image analysis
0.112012
Entropy-Functional-Based Online Adaptive Decision Fusion Framework With Application to Wildfire Detection in Video · IEEE Trans. Image Process. 2012
Multimedia analysis and retrieval
video analysis
0.112012
Entropy-Functional-Based Online Adaptive Decision Fusion Framework With Application to Wildfire Detection in Video · IEEE Trans. Image Process. 2012

Methods — techniques the papers use, named apart from their topics

stein's lemma · 0.7sampling · 0.7hessian estimation · 0.7shape prior · 0.3marked poisson process · 0.3gibbs sampling · 0.3online learning · 0.1entropy functional · 0.1convex sets · 0.1
YearPublicationVenuePosition
2023 SmoothHess: ReLU Network Feature Interactions via Stein's Lemma
abstract
Several recent methods for interpretability model feature interactions by looking at the Hessian of a neural network. This poses a challenge for ReLU networks, which are piecewise-linear and thus have a zero Hessian almost everywhere. We propose SmoothHess, a method of estimating second-order interactions through Stein's Lemma. In particular, we estimate the Hessian of the network convolved with a Gaussian through an efficient sampling algorithm, requiring only network gradient calls. SmoothHess is applied post-hoc, requires no modifications to the ReLU network architecture, and the extent of smoothing can be controlled explicitly. We provide a non-asymptotic bound on the sample complexity of our estimation procedure. We validate the superior ability of SmoothHess to capture interactions on benchmark datasets and a real-world medical spirometry dataset.
Max Torop, Aria Masoomi, Davin Hill, Kivanç Köse, Stratis Ioannidis, Jennifer G. Dy
NeurIPS4
2021 Segmentation of cellular patterns in confocal images of melanocytic lesions in vivo via a multiscale encoder-decoder network (MED-Net)
Kivanç Köse, Alican Bozkurt, Christi Alessi-Fox, Melissa Gill, Caterina Longo, Giovanni Pellacani, Jennifer G. Dy, Dana H. Brooks, Milind Rajadhyaksha
Medical Image Anal.1
2018 A Multiresolution Convolutional Neural Network with Partial Label Training for Annotating Reflectance Confocal Microscopy Images of Skin
Alican Bozkurt, Kivanç Köse, Christi Alessi-Fox, Melissa Gill, Jennifer G. Dy, Dana H. Brooks, Milind Rajadhyaksha
MICCAI (2)2
2017 A Marked Poisson Process Driven Latent Shape Model for 3D Segmentation of Reflectance Confocal Microscopy Image Stacks of Human Skin
abstract
Segmenting objects of interest from 3D data sets is a common problem encountered in biological data. Small field of view and intrinsic biological variability combined with optically subtle changes of intensity, resolution, and low contrast in images make the task of segmentation difficult, especially for microscopy of unstained living or freshly excised thick tissues. Incorporating shape information in addition to the appearance of the object of interest can often help improve segmentation performance. However, the shapes of objects in tissue can be highly variable and design of a flexible shape model that encompasses these variations is challenging. To address such complex segmentation problems, we propose a unified probabilistic framework that can incorporate the uncertainty associated with complex shapes, variable appearance, and unknown locations. The driving application that inspired the development of this framework is a biologically important segmentation problem: the task of automatically detecting and segmenting the dermal-epidermal junction (DEJ) in 3D reflectance confocal microscopy (RCM) images of human skin. RCM imaging allows noninvasive observation of cellular, nuclear, and morphological detail. The DEJ is an important morphological feature as it is where disorder, disease, and cancer usually start. Detecting the DEJ is challenging, because it is a 2D surface in a 3D volume which has strong but highly variable number of irregularly spaced and variably shaped "peaks and valleys." In addition, RCM imaging resolution, contrast, and intensity vary with depth. Thus, a prior model needs to incorporate the intrinsic structure while allowing variability in essentially all its parameters. We propose a model which can incorporate objects of interest with complex shapes and variable appearance in an unsupervised setting by utilizing domain knowledge to build appropriate priors of the model. Our novel strategy to model this structure combines a spatial Poisson process with shape priors and performs inference using Gibbs sampling. Experimental results show that the proposed unsupervised model is able to automatically detect the DEJ with physiologically relevant accuracy in the range 10- 20 μm .
Sindhu Ghanta, Michael I. Jordan, Kivanç Köse, Dana H. Brooks, Milind Rajadhyaksha, Jennifer G. Dy
IEEE Trans. Image Process.3
2014 Denoising using projections onto the epigraph set of convex cost functions
abstract
A new denoising algorithm based on orthogonal projections onto the epigraph set of a convex cost function is presented. In this algorithm, the dimension of the minimization problem is lifted by one and feasibility sets corresponding to the cost function using the epigraph concept are defined. As the utilized cost function is a convex function in RN, the corresponding epigraph set is also a convex set in RN+1. The denoising algorithm starts with an arbitrary initial estimate in RN+1. At each step of the iterative denoising, an orthogonal projection is performed onto one of the constraint sets associated with the cost function in a sequential manner. The method provides globally optimal solutions for total-variation, ℓ1, ℓ2, and entropic cost functions.
Mohammad Tofighi, Kivanç Köse, A. Enis Çetin
ICIP2
2012 Filtered Variation method for denoising and sparse signal processing
abstract
We propose a new framework, called Filtered Variation (FV), for denoising and sparse signal processing applications. These problems are inherently ill-posed. Hence, we provide regularization to overcome this challenge by using discrete time filters that are widely used in signal processing. We mathematically define the FV problem, and solve it using alternating projections in space and transform domains. We provide a globally convergent algorithm based on the projections onto convex sets approach. We apply to our algorithm to real denoising problems and compare it with the total variation recovery.
Kivanç Köse, Volkan Cevher, A. Enis Çetin
ICASSP1
2012 Entropy-Functional-Based Online Adaptive Decision Fusion Framework With Application to Wildfire Detection in Video
abstract
In this paper, an entropy-functional-based online adaptive decision fusion (EADF) framework is developed for image analysis and computer vision applications. In this framework, it is assumed that the compound algorithm consists of several subalgorithms, each of which yields its own decision as a real number centered around zero, representing the confidence level of that particular subalgorithm. Decision values are linearly combined with weights that are updated online according to an active fusion method based on performing entropic projections onto convex sets describing subalgorithms. It is assumed that there is an oracle, who is usually a human operator, providing feedback to the decision fusion method. A video-based wildfire detection system was developed to evaluate the performance of the decision fusion algorithm. In this case, image data arrive sequentially, and the oracle is the security guard of the forest lookout tower, verifying the decision of the combined algorithm. The simulation results are presented.
Osman Günay, B. Ugur Töreyin, Kivanç Köse, A. Enis Çetin
IEEE Trans. Image Process.3
2010 Content-adaptive color transform for image compression
abstract
In this paper, an adaptive color transform for image compression is introduced. In each block of the image coefficients of the color transform are determined from the previously compressed neighboring blocks using weighted sums of the RGB pixel values, making the transform block-specific. There is no need to transmit or store the transform coefficients because they are estimated from previous blocks. The compression efficiency of the transform is demonstrated using the JPEG image coding scheme. In general, the suggested transformation results in better PSNR values for a given compression level.
Alexander Suhre, Kivanç Köse, A. Enis Çetin, Metin Nafi Gürcan
ICIP2
2010 3D Model compression using Connectivity-Guided Adaptive Wavelet Transform built into 2D SPIHT
Kivanç Köse, A. Enis Çetin, Ugur Güdükbay, Levent Onural
J. Vis. Commun. Image Represent.1
2009 Progressive Compression of Digital Elevation Data using Meshes
abstract
In this paper a new Digital Elevation Map (DEM) image compression algorithm is proposed. DEM image can be threated as a grayscale image, whose pixel values are the elevation values of the map points. The grayscale DEM image is compressed using an adaptive wavelet based image compression algorithm. The method, which is an extension of the progressive mesh compression takes advantage of the multiresolution property of the wavelets while coding the map images. This makes it possible to decode different resolutions of the map from the encoded bit stream providing a multiresolution display of a given map. Experimental results are presented.
Kivanç Köse, Erdal Yilmaz, A. Enis Çetin
IGARSS (4)1