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Balaram Bhattacharyya

dblp:55/6010 · DBLP profile ↗
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3ranked-venue papers
1as first author
1since 2021 · last 2021
0000-0001-7822-6470ORCID · corroborated

Domains — the database's venue-derived domains; a paper can count in several

Artificial intelligence and machine learning · 1Databases, data management, data science and information retrieval · 1Applied, interdisciplinary, general and emerging computing · 1 · 1 first-author · 1 since 2021

Expertise — from the expertise taxonomy: the topics of the expert's papers under the CCF categories. A weight counts papers with recency: 1 for a paper about the topic, 0.3 when the topic is its context, halved every five years.

Interdisciplinary, comprehensive, and emerging computing
1 paper
Bioinformatics and computational biology · 100%

Topics — the 4 heaviest of 4, each with the papers that count most for it

TopicWeightPapersLastEvidence papers
Bioinformatics and computational biology
comparative genomics
0.512021
Tandem repeat interval pattern identifies animal taxa · Bioinform. 2021
Bioinformatics and computational biology › genomics
genome analysis
0.512021
Tandem repeat interval pattern identifies animal taxa · Bioinform. 2021
Bioinformatics and computational biology › phylogenetics
phylogeny reconstruction
0.512021
Tandem repeat interval pattern identifies animal taxa · Bioinform. 2021
Bioinformatics and computational biology › sequence analysis › repeat detection
tandem repeat discovery
0.512021
Tandem repeat interval pattern identifies animal taxa · Bioinform. 2021

Methods — techniques the papers use, named apart from their topics

information entropy · 0.5
YearPublicationVenuePosition
2021 Tandem repeat interval pattern identifies animal taxa
abstract
MOTIVATION: We discover that maximality of information content among intervals of Tandem Repeats (TRs) in animal genome segregates over taxa such that taxa identification becomes swift and accurate. Successive TRs of a motif occur at intervals over the sequence, forming a trail of TRs of the motif across the genome. We present a method, Tandem Repeat Information Mining (TRIM), that mines 4k number of TR trails of all k length motifs from a whole genome sequence and extracts the information content within intervals of the trails. TRIM vector formed from the ordered set of interval entropies becomes instrumental for genome segregation. RESULTS: Reconstruction of correct phylogeny for animals from whole genome sequences proves precision of TRIM. Identification of animal taxa by TRIM vector upon feature selection is the most significant achievement. These suggest Tandem Repeat Interval Pattern (TRIP) is a taxa-specific constitutional characteristic in animal genome. AVAILABILITYAND IMPLEMENTATION: Source and executable code of TRIM along with usage manual are made available at https://github.com/BB-BiG/TRIM. SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online.
Balaram Bhattacharyya, Uddalak Mitra, Ramkishore Bhattacharyya
Bioinform.1
2020 PEER: A direct method for biosequence pattern mining through waits of optimal k-mers
Uddalak Mitra, Balaram Bhattacharyya, Tathagato Mukhopadhyay
Inf. Sci.2
2012 Biomedical Color Image Segmentation through Precise Seed Selection in Fuzzy Clustering
Byomkesh Mandal, Balaram Bhattacharyya
EANN2