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Katja Bettenbrock

dblp:56/1813 · DBLP profile ↗
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1ranked-venue papers
0as first author
0since 2021 · last 2008
—ORCID · unresolved

Domains — the database's venue-derived domains; a paper can count in several

Applied, interdisciplinary, general and emerging computing · 1

Expertise — from the expertise taxonomy: the topics of the expert's papers under the CCF categories. A weight counts papers with recency: 1 for a paper about the topic, 0.3 when the topic is its context, halved every five years.

Interdisciplinary, comprehensive, and emerging computing
1 paper
Bioinformatics and computational biology · 100%

Topics — the 3 heaviest of 3, each with the papers that count most for it

TopicWeightPapersLastEvidence papers
Bioinformatics and computational biology › biological network › network biology
feed-forward loop
0.112008
A feed-forward loop guarantees robust behavior in Escherichia coli carbohydrate uptake · Bioinform. 2008
Bioinformatics and computational biology
systems biology
0.112008
A feed-forward loop guarantees robust behavior in Escherichia coli carbohydrate uptake · Bioinform. 2008
Bioinformatics and computational biology › systems biology
parameter estimation
0.012008
A feed-forward loop guarantees robust behavior in Escherichia coli carbohydrate uptake · Bioinform. 2008

Methods — techniques the papers use, named apart from their topics

robustness analysis · 0.1ordinary differential equation modeling · 0.1
YearPublicationVenuePosition
2008 A feed-forward loop guarantees robust behavior in Escherichia coli carbohydrate uptake
abstract
MOTIVATION: In Escherichia coli, the phosphoenolpyruvate: carbohydrate phosphotransferase system acts like a sensory element which is able to measure the flux through glycolysis. Since the output of the sensor, the phosphorylated form of protein EIIA, is connected to the activity of the global transcription factor Crp, the kinetic and structural properties of the system are important for the understanding of the overall cellular behavior. RESULTS: A family of mathematical models is presented, varying with respect to their degree of complexity (number of reactions that are taken into account, number of parameters) that show a structurally and quantitatively robust behavior. The models describe a set of experimental data that relates the output of the sensor to the specific growth rate. A central element that is responsible for the structural robustness is a feed-forward loop in the glycolysis, namely the activation of the pyruvate kinase reaction by a metabolite of the upper part of the glycolysis. The robustness is shown for variations of the measured data as well as for variations of the parameters. AVAILABILITY: MATLAB files for model simulations are available on http://www.mpi-magdeburg.mpg.de/people/kre/robust/ A short description of the files provided on this site can be found in the Supporting information.
Andreas Kremling, Katja Bettenbrock, Ernst Dieter Gilles
Bioinform.2