Nonparametric regression has proven to be successful in extracting features from limited data in neurological applications. However, due to data scarcity, most brain-computer interfaces still rely on linear classifiers. This work leverages the robustness of the James-Stein theorem in nonparametric regression to harness the potentials of deep learning and foster its successful application in neural engineering with small data sets. We propose a novel method that combines James-Stein regression for feature extraction, and deep neural network for decoding; we refer to the architecture as deep James-Stein neural network (DJSNN). We apply the DJSNN to decode eye movement goals in a memory-guided visual saccades to one of eight target locations. The results demonstrate that the DJSNN outperforms existing methods by a substantial margin, especially at deep cortical sites.

Neural-Matrix style, high-density electrode arrays for brain-machine interfaces (BMIs) and neuroscientific research require the use of multiplexing: Each recording channel can be routed to one of several electrode sites on the array. This capability allows the user to flexibly distribute recording channels to the locations where the most desirable neural signals can be resolved. For example, in the Neuropixel probe, 960 electrodes can be addressed by 384 recording channels. However, currently no adaptive methods exist to use recorded neural data to optimize/customize the electrode selections per recording context. Here, we present an algorithm called classification-based selection (CBS) that optimizes the joint electrode selections for all recording channels so as to maximize isolation quality of detected neurons. We show, in experiments using Neuropixels in non-human primates, that this algorithm yields a similar number of isolated neurons as would be obtained if all electrodes were recorded simultaneously. Neuron counts were 41-85% improved over previously published electrode selection strategies. The neurons isolated from electrodes selected by CBS were a 73% match, by spike timing, to the complete set of recordable neurons around the probe. The electrodes selected by CBS exhibited higher average per-recording-channel signal-to-noise ratio. CBS, and selection optimization in general, could play an important role in development of neurotechnologies for BMI, as signal bandwidth becomes an increasingly limiting factor. Code and experimental data have been made available.

A macaque monkey is trained to perform two different kinds of tasks, memory aided and visually aided. In each task, the monkey saccades to eight possible target locations. A classifier is proposed for direction decoding and task decoding based on local field potentials (LFP) collected from the prefrontal cortex. The LFP time-series data is modeled in a nonparametric regression framework, as a function corrupted by Gaussian noise. It is shown that if the function belongs to Besov bodies, then the proposed wavelet shrinkage and thresholding based classifier is robust and consistent. The classifier is then applied to the LFP data to achieve high decoding performance. The proposed classifier is also quite general and can be applied for the classification of other types of time-series data as well, not necessarily brain data.