In this paper, we present an early performance evaluation of a 624-core cluster based on the Intel® Xeon® Processor 5560 (code named "Nehalem-EP", and referred to as Xeon 5560 in this paper)---the third-generation quad-core architecture from Intel. This is the first processor from Intel with a non-uniform memory access (NUMA) architecture managed by on-chip integrated memory controller. It employs a point-to-point interconnect called the Intel® QuickPath Interconnect (QPI) between processors and to the input/output (I/O) hub. It also introduces to a quad-core architecture both Intel's hyper-threading technology (or simultaneous multi-threading, "SMT") and Intel® Turbo Boost Technology ("Turbo mode") that automatically allow processor cores to run faster than the base operating frequency if the processor is operating below rated power, temperature, and current specification limits. It can be engaged with any number of cores or logical processors enabled and active. We critically evaluate these features using the High Performance Computing Challenge (HPCC) benchmarks, NAS Parallel Benchmarks (NPB), and four full-scale scientific applications. We compare and contrast the results of a cluster based on the Xeon 5560 with an SGI® Altix® ICE 8200EX cluster of quad-core Intel® Xeon® 5472 Processor ("Xeon 5472" from here on) and another cluster of Intel® Xeon® 5462 Processor ("Xeon 5462"; the Xeon 5400 Series Processors are previous generation quad-core Intel processors and were code named Harpertown).

Suitability of the next generation of high-performance computing systems for petascale simulations will depend on a balance between factors such as processor performance, memory performance, local and global network performance, and Input/Output (I/O) performance. As the supercomputing industry develops new technologies for these subsystems, achieving system balance becomes challenging. In this paper, we evaluate the performance of a newly introduced dual-core-based SGI Altix 4700 system and we compare its performance with that of a single-core-based SGI Altix 3700 Bx2 system. We used the High-Performance Computing Challenge (HPCC) benchmarks and five real-world applications, three from computational fluid dynamics, one from climate modeling and one from nanotechnology. Our study shows that the SGI Altix 4700 performs slightly better than the SGI Altix 3700 Bx2 up to 128 processors, while the performance of the systems is almost the same beyond 128 processors, when the communication time dominates the compute time.

We describe a concurrent visualization pipeline designed for operation in a production supercomputing environment. The facility was initially developed on the NASA Ames "Columbia" supercomputer for a massively parallel forecast model (GEOS4). During the 2005 Atlantic hurricane season, GEOS4 was run 4 times a day under tight time constraints so that its output could be included in an ensemble prediction that was made available to forecasters at the National Hurricane Center. Given this time-critical context, we designed a configurable concurrent pipeline to visualize multiple global fields without significantly affecting the runtime model performance or reliability. We use MPEG compression of the accruing images to facilitate live low-bandwidth distribution of multiple visualization streams to remote sites. We also describe the use of our concurrent visualization framework with a global ocean circulation model, which provides a 864-fold increase in the temporal resolution of practically achievable animations. In both the atmospheric and oceanic circulation models, the application scientists gained new insights into their model dynamics, due to the high temporal resolution animations attainable.