Gwenolé Quellec

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37ranked-venue papers
18as first author
11since 2021 · last 2026
0000-0003-1669-7140ORCID · verified

Domains — the database's venue-derived domains; a paper can count in several

Applied, interdisciplinary, general and emerging computing · 28 · 16 first-author · 8 since 2021Graphics, computer vision, multimedia, augmented reality and games · 5 · 2 first-author · 1 since 2021Artificial intelligence and machine learning · 4 · 1 first-author · 2 since 2021Security and privacy · 2 · 1 since 2021Human-computer interaction and ubiquitous computing · 1 · 1 first-author
YearPublicationVenuePosition
2026 Turning Distillation against Obfuscation: A Recovery Framework for DNN White-Box Watermarks
abstract
White-box watermarking embeds ownership signatures directly into DNN parameters, yet it faces a critical blind spot: topology-altering obfuscation. By modifying a model’s internal structure while preserving its input-output behavior, an attacker can misalign the watermark from its expected parameter locations, causing standard white-box extractors to fail. We investigate whether existing white-box watermarks remain verifiable after such attacks by introducing Distillation-as-Defense: rather than reversing the obfuscation, we distill the obfuscated model (Teacher) into a student with the original architecture, forcing it to reconstruct the functional watermark representation. We systematically evaluate ten white-box watermarking schemes—eight static (weight-based) and two dynamic (activation-based)—across classifiers, generative models, and transformers. Dynamic methods consistently recover their watermarks under feature-map alignment distillation, while most static methods fail on deep architectures due to internal representation redundancy. These findings reveal that current white-box schemes were not designed with distillation robustness in mind. We conclude that resistance to distillation is a necessary condition for a white-box watermark to withstand topology-altering obfuscation, and we discuss a concrete design guidelines toward this goal.
Mahdieh Pouresmaeil, Reda Bellafqira, Kassem Kallas, Gwenolé Quellec, Gouenou Coatrieux
IH&MMSec4
2026 SarAdapter: Prioritizing Attention on Semantic-Aware Representative Tokens for Enhanced Medical Image Segmentation
abstract
Transformer-based segmentation methods exhibit considerable potential in medical image analysis. However, their improved performance often comes with increased computational complexity, limiting their application in resource-constrained medical settings. Prior methods follow two independent tracks: (i) accelerating existing networks via semantic-aware routing, and (ii) optimizing token adapter design to enhance network performance. Despite directness, they encounter unavoidable defects (e.g., inflexible acceleration techniques or non-discriminative processing) limiting further improvements of quality-complexity trade-off. To address these shortcomings, we integrate these schemes by proposing the semantic-aware adapter (SarAdapter), which employs a semantic-based routing strategy, leveraging neural operators (ViT and CNN) of varying complexities. Specifically, it merges semantically similar tokens volume into low-resolution regions while preserving semantically distinct tokens as high-resolution regions. Additionally, we introduce a Mixed-adapter unit, which adaptively selects convolutional operators of varying complexities to better model regions at different scales. We evaluate our method on four medical datasets from three modalities and show that it achieves a superior balance between accuracy, model size, and efficiency. Notably, our proposed method achieves state-of-the-art segmentation quality on the Synapse dataset while reducing the number of tokens by 65.6%, signifying a substantial improvement in the efficiency of ViTs for the segmentation task.
Weili Jiang, Zaiyi Liu, Lin An, Gwenolé Quellec, Chubin Ou
IEEE Trans. Medical Imaging5
2026 JustRAIGS: Justified Referral in AI Glaucoma Screening Challenge
abstract
A major contributor to permanent vision loss is glaucoma. Early diagnosis is crucial for preventing vision loss due to glaucoma, making glaucoma screening essential. A more affordable method of glaucoma screening can be achieved by applying artificial intelligence to evaluate color fundus photographs (CFPs). We present the Justified Referral in AI Glaucoma Screening (JustRAIGS) challenge to further develop these AI algorithms for glaucoma screening and to assess their efficacy. To support this challenge, we have generated a distinctive big dataset containing more than 110,000 meticulously labeled CFPs obtained from approximately 60,000 patients and 500 distinct screening centers in the USA. Our objective is to assess the practicality of creating advanced and dependable AI systems that can take a CFP as input and produce the probability of referable glaucoma, as well as outputs for glaucoma justification by integrating both binary and multi-label classification tasks. This paper presents the evaluation of solutions provided by nine teams, recognizing the team with the highest level of performance. The highest achieved score of sensitivity at a specificity level of 95% was 85%, and the highest achieved score of Hamming losses average was 0.13. Additionally, we test the top three participants' algorithms on an external dataset to validate the performance and generalization of these models. The outcomes of this research can offer valuable insights into the development of intelligent systems for detecting glaucoma. Ultimately, findings can aid in the early detection and treatment of glaucoma patients, hence decreasing preventable vision impairment and blindness caused by glaucoma.
Yeganeh Madadi, Hina Raja, Koen A. Vermeer, Hans G. Lemij, Xiaoqin Huang, Gitaek Kwon, Adrian Galdran, Miguel Ángel González Ballester, Dan Presil, Kristhian Aguilar, Victor F. Cavalcante, Celso B. Carvalho, Waldir S. S. Júnior, Mateus Oliveira, Charilaos Apostolidis, Aggelos K. Katsaggelos, Tomasz Kubrak, Ángela Casado, Jónathan Heras, Marcos Ortega 0001, Lucía Ramos, Philippe Zhang, Weili Jiang, Pierre-Henri Conze, Mathieu Lamard, Gwenolé Quellec, Mostafa El Habib Daho, Madukuri Shaurya, Anumeha Varma, Siamak Yousefi
IEEE Trans. Medical Imaging33
2025 Boundary-aware dynamic re-weighting for semi-supervised medial image segmentation
Weili Jiang, Xifei Wei, Gwenolé Quellec, Weixin Si, Chubin Ou
Expert Syst. Appl.6
2025 RFMiD: Retinal Image Analysis for multi-Disease Detection challenge
Samiksha Pachade, Prasanna Porwal, Manesh Kokare, Girish Deshmukh, Vivek Sahasrabuddhe, Zhengbo Luo, Zitang Sun, Li Qihan, Edward Ho, Asaanth Sivajohan, Saerom Youn, Kevin Lane, Jin Chun, Yunchao Gu, Sixu Lu, Young-tack Oh, Hyunjin Park, Chia-Yen Lee, Hung Yeh, Kai-Wen Cheng, Haoyu Wang 0010, Jin Ye 0002, Junjun He, Lixu Gu, Dominik Müller, Iñaki Soto Rey, Frank Kramer 0001, Hidehisa Arai, Yuma Ochi, Takami Okada, Luca Giancardo, Gwenolé Quellec, Fabrice Mériaudeau
Medical Image Anal.36
2024 LaTiM: Longitudinal Representation Learning in Continuous-Time Models to Predict Disease Progression
Rachid Zeghlache, Pierre-Henri Conze, Mostafa El Habib Daho, Hugo Le Boité, Ramin Tadayoni, Pascale Massin, Béatrice Cochener, Alireza Rezaei 0002, Ikram Brahim, Gwenolé Quellec, Mathieu Lamard
MICCAI (5)11
2024 DISCOVER: 2-D multiview summarization of Optical Coherence Tomography Angiography for automatic diabetic retinopathy diagnosis
abstract
Diabetic Retinopathy (DR), an ocular complication of diabetes, is a leading cause of blindness worldwide. Traditionally, DR is monitored using Color Fundus Photography (CFP), a widespread 2-D imaging modality. However, DR classifications based on CFP have poor predictive power, resulting in suboptimal DR management. Optical Coherence Tomography Angiography (OCTA) is a recent 3-D imaging modality offering enhanced structural and functional information (blood flow) with a wider field of view. This paper investigates automatic DR severity assessment using 3-D OCTA. A straightforward solution to this task is a 3-D neural network classifier. However, 3-D architectures have numerous parameters and typically require many training samples. A lighter solution consists in using 2-D neural network classifiers processing 2-D en-face (or frontal) projections and/or 2-D cross-sectional slices. Such an approach mimics the way ophthalmologists analyze OCTA acquisitions: (1) en-face flow maps are often used to detect avascular zones and neovascularization, and (2) cross-sectional slices are commonly analyzed to detect macular edemas, for instance. However, arbitrary data reduction or selection might result in information loss. Two complementary strategies are thus proposed to optimally summarize OCTA volumes with 2-D images: (1) a parametric en-face projection optimized through deep learning and (2) a cross-sectional slice selection process controlled through gradient-based attribution. The full summarization and DR classification pipeline is trained from end to end. The automatic 2-D summary can be displayed in a viewer or printed in a report to support the decision. We show that the proposed 2-D summarization and classification pipeline outperforms direct 3-D classification with the advantage of improved interpretability.
Mostafa El Habib Daho, Rachid Zeghlache, Hugo Le Boité, Pierre Deman, Laurent Borderie, Hugang Ren, Niranchana Manivannan, Capucine Lepicard, Béatrice Cochener, Aude Couturier, Ramin Tadayoni, Pierre-Henri Conze, Mathieu Lamard, Gwenolé Quellec
Artif. Intell. Medicine15
2022 ADAM Challenge: Detecting Age-Related Macular Degeneration From Fundus Images
abstract
Age-related macular degeneration (AMD) is the leading cause of visual impairment among elderly in the world. Early detection of AMD is of great importance, as the vision loss caused by this disease is irreversible and permanent. Color fundus photography is the most cost-effective imaging modality to screen for retinal disorders. Cutting edge deep learning based algorithms have been recently developed for automatically detecting AMD from fundus images. However, there are still lack of a comprehensive annotated dataset and standard evaluation benchmarks. To deal with this issue, we set up the Automatic Detection challenge on Age-related Macular degeneration (ADAM), which was held as a satellite event of the ISBI 2020 conference. The ADAM challenge consisted of four tasks which cover the main aspects of detecting and characterizing AMD from fundus images, including detection of AMD, detection and segmentation of optic disc, localization of fovea, and detection and segmentation of lesions. As part of the ADAM challenge, we have released a comprehensive dataset of 1200 fundus images with AMD diagnostic labels, pixel-wise segmentation masks for both optic disc and AMD-related lesions (drusen, exudates, hemorrhages and scars, among others), as well as the coordinates corresponding to the location of the macular fovea. A uniform evaluation framework has been built to make a fair comparison of different models using this dataset. During the ADAM challenge, 610 results were submitted for online evaluation, with 11 teams finally participating in the onsite challenge. This paper introduces the challenge, the dataset and the evaluation methods, as well as summarizes the participating methods and analyzes their results for each task. In particular, we observed that the ensembling strategy and the incorporation of clinical domain knowledge were the key to improve the performance of the deep learning models.
Huihui Fang, Fei Li 0021, Huazhu Fu, Xu Sun 0006, Xingxing Cao, Fengbin Lin, Jaemin Son, Gwenolé Quellec, Sarah Matta, Sharath M. Shankaranarayana, Chuen-heng Wang, Nisarg A. Shah, Chia-Yen Lee, Chih-Chung Hsu, Hai Xie, Bai Ying Lei, Ujjwal Baid, Shubham Innani, Kang Dang, Wenxiu Shi, Ravi Kamble, Nitin Singhal, Ching-Wei Wang, Shih-Chang Lo, José Ignacio Orlando, Hrvoje Bogunovic, Xiulan Zhang, Yanwu Xu 0001
IEEE Trans. Medical Imaging9
2021 CaDIS: Cataract dataset for surgical RGB-image segmentation
abstract
Video feedback provides a wealth of information about surgical procedures and is the main sensory cue for surgeons. Scene understanding is crucial to computer assisted interventions (CAI) and to post-operative analysis of the surgical procedure. A fundamental building block of such capabilities is the identification and localization of surgical instruments and anatomical structures through semantic segmentation. Deep learning has advanced semantic segmentation techniques in the recent years but is inherently reliant on the availability of labelled datasets for model training. This paper introduces a dataset for semantic segmentation of cataract surgery videos complementing the publicly available CATARACTS challenge dataset. In addition, we benchmark the performance of several state-of-the-art deep learning models for semantic segmentation on the presented dataset. The dataset is publicly available at https://cataracts-semantic-segmentation2020.grand-challenge.org/.
Maria Grammatikopoulou, Evangello Flouty, Abdolrahim Kadkhodamohammadi, Gwenolé Quellec, Andre Chow, Jean Nehme, Imanol Luengo, Danail Stoyanov
Medical Image Anal.4
2021 ExplAIn: Explanatory artificial intelligence for diabetic retinopathy diagnosis
Gwenolé Quellec, Hassan Al Hajj, Mathieu Lamard, Pierre-Henri Conze, Pascale Massin, Béatrice Cochener
Medical Image Anal.1
2021 Towards improved breast mass detection using dual-view mammogram matching
Yutong Yan, Pierre-Henri Conze, Mathieu Lamard, Gwenolé Quellec, Béatrice Cochener, Gouenou Coatrieux
Medical Image Anal.4
2020 Automatic detection of rare pathologies in fundus photographs using few-shot learning
Gwenolé Quellec, Mathieu Lamard, Pierre-Henri Conze, Pascale Massin, Béatrice Cochener
Medical Image Anal.1
2019 Unsupervised learning-based long-term superpixel tracking
Pierre-Henri Conze, Florian Tilquin, Mathieu Lamard, Fabrice Heitz, Gwenolé Quellec
Image Vis. Comput.5
2019 CATARACTS: Challenge on automatic tool annotation for cataRACT surgery
Hassan Al Hajj, Mathieu Lamard, Pierre-Henri Conze, Soumali Roychowdhury, Xiaowei Hu 0001, Gabija Marsalkaite, Odysseas Zisimopoulos, Muneer Ahmad Dedmari, Fenqiang Zhao, Jonas Prellberg, Manish Sahu, Adrian Galdran, Teresa Araujo, Duc My Vo, Chandan Panda, Navdeep Dahiya, Satoshi Kondo, Zhengbing Bian, Gwenolé Quellec
Medical Image Anal.19
2018 Anomaly classification in digital mammography based on multiple-instance learning
abstract
Cancer tissues in mammography images exhibit abnormal regions; it is of great clinical importance to label a mammography image as having cancerous regions or not, perform the corresponding image segmentation. However, the detailed annotation of the cancer region is often an ambiguous and challenging task. The authors describe a fully automatic computer‐aided detection and diagnosis (CAD) system to detect and classify breast cancer as malignant or benign, by using mammography and building on the multiple‐instance learning (MIL) algorithms, which has been confirmed beneficial for radiologist decision sustenance. Traditional learning methods require great effort to annotate the training data by costly manual labelling and specialised computational models to detect these annotations during the test. The proposed CAD system simultaneously performs pixel‐level segmentation (suspicious versus normal tissue) and image‐level classification (benign versus malignant image). The set‐up of the proposed system is in order: automatically segmented regions of interest (ROIs). Then, features derived from ROIs detected such as textural features and shape features are selected and extracted from each region and combined them to classify ROIs as ‘benign’ or ‘malignant’, by implementing MIL algorithms. Experimental results demonstrate the efficiency and robustness of the proposed CAD system compared with previous work in the literature.
Abdelali Elmoufidi, Khalid El Fahssi, Said Jai-Andaloussi, Abderrahim Sekkaki, Gwenolé Quellec, Mathieu Lamard
IET Image Process.5
2018 Monitoring tool usage in surgery videos using boosted convolutional and recurrent neural networks
Hassan Al Hajj, Mathieu Lamard, Pierre-Henri Conze, Béatrice Cochener, Gwenolé Quellec
Medical Image Anal.5
2017 Proxy Re-Encryption Based on Homomorphic Encryption
abstract
In this paper, we propose an homomorphic proxy re-encryption scheme (HPRE) that allows different users to share data they outsourced homomorphically encrypted using their respective public keys with the possibility by next to process such data remotely. Its originality stands on a solution we propose so as to compute the difference of data encrypted with Damgard-Jurik cryptosystem. It takes also advantage of a secure combined linear congruential generator that we implemented in the Damgard-Jurik encrypted domain. Basically, in our HPRE scheme, the two users, the delegator and the delegate, ask the cloud server to generate an encrypted noise based on a secret key, both users previously agreed on. Based on our solution to compute the difference in Damgard-Jurik encrypted domain, the cloud computes in clear the differences in-between the encrypted noise and the encrypted data of the delegator, obtaining thus blinded data. In order the delegate gets access to the data, the cloud just has to encrypt these differences using the delegate's public key and then removes the noise. This solution doesn't need extra communication between the cloud and the delegator. Our HPRE was implemented in the case of the sharing of uncompressed images stored in the cloud showing good time computation performance, it is unidirectional and collusion-resistant. Nevertheless, it is not limited to images and can be used with any kinds of data.
Reda Bellafqira, Gouenou Coatrieux, Dalel Bouslimi, Gwenolé Quellec, Michel Cozic
ACSAC4
2017 Deep image mining for diabetic retinopathy screening
Gwenolé Quellec, Katia Charrière, Yassine Boudi, Béatrice Cochener, Mathieu Lamard
Medical Image Anal.1
2017 Real-time analysis of cataract surgery videos using statistical models
Katia Charrière, Gwenolé Quellec, Mathieu Lamard, David Martiano, Guy Cazuguel, Gouenou Coatrieux, Béatrice Cochener
Multim. Tools Appl.2
2016 Automatic detection of referral patients due to retinal pathologies through data mining
Gwenolé Quellec, Mathieu Lamard, Ali Erginay, Agnès Chabouis, Pascale Massin, Béatrice Cochener, Guy Cazuguel
Medical Image Anal.1
2016 Multiple-Instance Learning for Anomaly Detection in Digital Mammography
abstract
This paper describes a computer-aided detection and diagnosis system for breast cancer, the most common form of cancer among women, using mammography. The system relies on the Multiple-Instance Learning (MIL) paradigm, which has proven useful for medical decision support in previous works from our team. In the proposed framework, breasts are first partitioned adaptively into regions. Then, features derived from the detection of lesions (masses and microcalcifications) as well as textural features, are extracted from each region and combined in order to classify mammography examinations as "normal" or "abnormal". Whenever an abnormal examination record is detected, the regions that induced that automated diagnosis can be highlighted. Two strategies are evaluated to define this anomaly detector. In a first scenario, manual segmentations of lesions are used to train an SVM that assigns an anomaly index to each region; local anomaly indices are then combined into a global anomaly index. In a second scenario, the local and global anomaly detectors are trained simultaneously, without manual segmentations, using various MIL algorithms (DD, APR, mi-SVM, MI-SVM and MILBoost). Experiments on the DDSM dataset show that the second approach, which is only weakly-supervised, surprisingly outperforms the first approach, even though it is strongly-supervised. This suggests that anomaly detectors can be advantageously trained on large medical image archives, without the need for manual segmentation.
Gwenolé Quellec, Mathieu Lamard, Michel Cozic, Gouenou Coatrieux, Guy Cazuguel
IEEE Trans. Medical Imaging1
2015 Real-Time Task Recognition in Cataract Surgery Videos Using Adaptive Spatiotemporal Polynomials
abstract
This paper introduces a new algorithm for recognizing surgical tasks in real-time in a video stream. The goal is to communicate information to the surgeon in due time during a video-monitored surgery. The proposed algorithm is applied to cataract surgery, which is the most common eye surgery. To compensate for eye motion and zoom level variations, cataract surgery videos are first normalized. Then, the motion content of short video subsequences is characterized with spatiotemporal polynomials: a multiscale motion characterization based on adaptive spatiotemporal polynomials is presented. The proposed solution is particularly suited to characterize deformable moving objects with fuzzy borders, which are typically found in surgical videos. Given a target surgical task, the system is trained to identify which spatiotemporal polynomials are usually extracted from videos when and only when this task is being performed. These key spatiotemporal polynomials are then searched in new videos to recognize the target surgical task. For improved performances, the system jointly adapts the spatiotemporal polynomial basis and identifies the key spatiotemporal polynomials using the multiple-instance learning paradigm. The proposed system runs in real-time and outperforms the previous solution from our group, both for surgical task recognition ( Az = 0.851 on average, as opposed to Az = 0.794 previously) and for the joint segmentation and recognition of surgical tasks ( Az = 0.856 on average, as opposed to Az = 0.832 previously).
Gwenolé Quellec, Mathieu Lamard, Béatrice Cochener, Guy Cazuguel
IEEE Trans. Medical Imaging1
2014 Real-time recognition of surgical tasks in eye surgery videos
Gwenolé Quellec, Katia Charrière, Mathieu Lamard, Zakarya Droueche, Christian Roux, Béatrice Cochener, Guy Cazuguel
Medical Image Anal.1
2014 Exudate detection in color retinal images for mass screening of diabetic retinopathy
Guillaume Thibault, Etienne Decencière, Beatriz Marcotegui, Bruno Laÿ, Ronan Danno, Guy Cazuguel, Gwenolé Quellec, Mathieu Lamard, Pascale Massin, Agnès Chabouis, Zeynep Victor, Ali Erginay
Medical Image Anal.8
2014 Real-Time Segmentation and Recognition of Surgical Tasks in Cataract Surgery Videos
abstract
In ophthalmology, it is now common practice to record every surgical procedure and to archive the resulting videos for documentation purposes. In this paper, we present a solution to automatically segment and categorize surgical tasks in real-time during the surgery, using the video recording. The goal would be to communicate information to the surgeon in due time, such as recommendations to the less experienced surgeons. The proposed solution relies on the content-based video retrieval paradigm: it reuses previously archived videos to automatically analyze the current surgery, by analogy reasoning. Each video is segmented, in real-time, into an alternating sequence of idle phases, during which no clinically-relevant motions are visible, and action phases. As soon as an idle phase is detected, the previous action phase is categorized and the next action phase is predicted. A conditional random field is used for categorization and prediction. The proposed system was applied to the automatic segmentation and categorization of cataract surgery tasks. A dataset of 186 surgeries, performed by ten different surgeons, was manually annotated: ten possibly overlapping surgical tasks were delimited in each surgery. Using the content of action phases and the duration of idle phases as sources of evidence, an average recognition performance of Az = 0.832 ± 0.070 was achieved.
Gwenolé Quellec, Mathieu Lamard, Béatrice Cochener, Guy Cazuguel
IEEE Trans. Medical Imaging1
2012 A general framework for detecting diabetic retinopathy lesions in eye fundus images
abstract
A weakly supervised image classification framework is presented in this paper. Given reference images marked by clinicians as relevant or irrelevant, we learn to automatically detect relevant patterns, i.e. patterns that only appear in relevant images. After training, relevant patterns are sought in unseen images in order to classify each image as relevant or irrelevant. No manual segmentations are required. Because manual segmentation of medical images is extremely time-consuming, existing classification algorithms are usually trained on limited reference datasets. With the proposed framework, much larger medical datasets are now available for training. The proposed approach has been successfully applied to diabetic retinopathy detection in the Messidor dataset (Az=0.855). Moreover, we observed, in a new dataset of 473 manually segmented images, that all eight types of diabetic retinopathy lesions are detected.
Gwenolé Quellec, Mathieu Lamard, Béatrice Cochener, Christian Roux, Guy Cazuguel, Etienne Decencière, Bruno Laÿ, Pascale Massin
CBMS1
2012 A multiple-instance learning framework for diabetic retinopathy screening
Gwenolé Quellec, Mathieu Lamard, Michael D. Abràmoff, Etienne Decencière, Bruno Laÿ, Ali Erginay, Béatrice Cochener, Guy Cazuguel
Medical Image Anal.1
2012 Fast Wavelet-Based Image Characterization for Highly Adaptive Image Retrieval
abstract
Adaptive wavelet-based image characterizations have been proposed in previous works for content-based image retrieval (CBIR) applications. In these applications, the same wavelet basis was used to characterize each query image: This wavelet basis was tuned to maximize the retrieval performance in a training data set. We take it one step further in this paper: A different wavelet basis is used to characterize each query image. A regression function, which is tuned to maximize the retrieval performance in the training data set, is used to estimate the best wavelet filter, i.e., in terms of expected retrieval performance, for each query image. A simple image characterization, which is based on the standardized moments of the wavelet coefficient distributions, is presented. An algorithm is proposed to compute this image characterization almost instantly for every possible separable or nonseparable wavelet filter. Therefore, using a different wavelet basis for each query image does not considerably increase computation times. On the other hand, significant retrieval performance increases were obtained in a medical image data set, a texture data set, a face recognition data set, and an object picture data set. This additional flexibility in wavelet adaptation paves the way to relevance feedback on image characterization itself and not simply on the way image characterizations are combined.
Gwenolé Quellec, Mathieu Lamard, Guy Cazuguel, Béatrice Cochener, Christian Roux
IEEE Trans. Image Process.1
2012 Image Change Detection Using Paradoxical Theory for Patient Follow-Up Quantitation and Therapy Assessment
abstract
In clinical oncology, positron emission tomography (PET) imaging can be used to assess therapeutic response by quantifying the evolution of semi-quantitative values such as standardized uptake value, early during treatment or after treatment. Current guidelines do not include metabolically active tumor volume (MATV) measurements and derived parameters such as total lesion glycolysis (TLG) to characterize the response to the treatment. To achieve automatic MATV variation estimation during treatment, we propose an approach based on the change detection principle using the recent paradoxical theory, which models imprecision, uncertainty, and conflict between sources. It was applied here simultaneously to pre- and post-treatment PET scans. The proposed method was applied to both simulated and clinical datasets, and its performance was compared to adaptive thresholding applied separately on pre- and post-treatment PET scans. On simulated datasets, the adaptive threshold was associated with significantly higher classification errors than the developed approach. On clinical datasets, the proposed method led to results more consistent with the known partial responder status of these patients. The method requires accurate rigid registration of both scans which can be obtained only in specific body regions and does not explicitly model uptake heterogeneity. In further investigations, the change detection of intra-MATV tracer uptake heterogeneity will be developed by incorporating textural features into the proposed approach.
Simon David, Dimitris Visvikis, Gwenolé Quellec, Catherine Cheze Le Rest, Philippe Fernandez, Michèle Allard, Christian Roux, Mathieu Hatt
IEEE Trans. Medical Imaging3
2011 Case Retrieval in Medical Databases by Fusing Heterogeneous Information
abstract
A novel content-based heterogeneous information retrieval framework, particularly well suited to browse medical databases and support new generation computer aided diagnosis (CADx) systems, is presented in this paper. It was designed to retrieve possibly incomplete documents, consisting of several images and semantic information, from a database; more complex data types such as videos can also be included in the framework. The proposed retrieval method relies on image processing, in order to characterize each individual image in a document by their digital content, and information fusion. Once the available images in a query document are characterized, a degree of match, between the query document and each reference document stored in the database, is defined for each attribute (an image feature or a metadata). A Bayesian network is used to recover missing information if need be. Finally, two novel information fusion methods are proposed to combine these degrees of match, in order to rank the reference documents by decreasing relevance for the query. In the first method, the degrees of match are fused by the Bayesian network itself. In the second method, they are fused by the Dezert-Smarandache theory: the second approach lets us model our confidence in each source of information (i.e., each attribute) and take it into account in the fusion process for a better retrieval performance. The proposed methods were applied to two heterogeneous medical databases, a diabetic retinopathy database and a mammography screening database, for computer aided diagnosis. Precisions at five of 0.809 ± 0.158 and 0.821 ± 0.177, respectively, were obtained for these two databases, which is very promising.
Gwenolé Quellec, Mathieu Lamard, Guy Cazuguel, Christian Roux, Béatrice Cochener
IEEE Trans. Medical Imaging1
2011 Optimal Filter Framework for Automated, Instantaneous Detection of Lesions in Retinal Images
abstract
Automated detection of lesions in retinal images is a crucial step towards efficient early detection, or screening, of large at-risk populations. In particular, the detection of microaneurysms, usually the first sign of diabetic retinopathy (DR), and the detection of drusen, the hallmark of age-related macular degeneration (AMD), are of primary importance. In spite of substantial progress made, detection algorithms still produce 1) false positives-target lesions are mixed up with other normal or abnormal structures in the eye, and 2) false negatives-the large variability in the appearance of the lesions causes a subset of these target lesions to be missed. We propose a general framework for detecting and characterizing target lesions almost instantaneously. This framework relies on a feature space automatically derived from a set of reference image samples representing target lesions, including atypical target lesions, and those eye structures that are similar looking but are not target lesions. The reference image samples are obtained either from an expert- or a data-driven approach. Factor analysis is used to derive the filters generating this feature space from reference samples. Previously unseen image samples are then classified in this feature space. We tested this approach by training it to detect microaneurysms. On a set of images from 2739 patients including 67 with referable DR, DR detection area under the receiver-operating characteristic curve (AUC) was comparable (AUC=0.927) to our previously published red lesion detection algorithm (AUC=0.929). We also tested the approach on the detection of AMD, by training it to differentiate drusen from Stargardt's disease lesions, and achieved an AUC=0.850 on a set of 300 manually detected drusen and 300 manually detected flecks. The entire image processing sequence takes less than a second on a standard PC compared to minutes in our previous approach, allowing instantaneous detection. Free-response receiver-operating characteristic analysis showed the superiority of this approach over a framework where false positives and the atypical lesions are not explicitly modeled. A greater performance was achieved by the expert-driven approach for DR detection, where the designer had sound expert knowledge. However, for both problems, a comparable performance was obtained for both expert- and data-driven approaches. This indicates that annotation of a limited number of lesions suffices for building a detection system for any type of lesion in retinal images, if no expert-knowledge is available. We are studying whether the optimal filter framework also generalizes to the detection of any structure in other domains.
Gwenolé Quellec, Stephen R. Russell, Michael D. Abràmoff
IEEE Trans. Medical Imaging1
2010 Wavelet optimization for content-based image retrieval in medical databases
Gwenolé Quellec, Mathieu Lamard, Guy Cazuguel, Béatrice Cochener, Christian Roux
Medical Image Anal.1
2010 Adaptive Nonseparable Wavelet Transform via Lifting and its Application to Content-Based Image Retrieval
abstract
We present in this paper a novel way to adapt a multidimensional wavelet filter bank, based on the nonseparable lifting scheme framework, to any specific problem. It allows the design of filter banks with a desired number of degrees of freedom, while controlling the number of vanishing moments of the primal wavelet ((~)N moments) and of the dual wavelet ( N moments). The prediction and update filters, in the lifting scheme based filter banks, are defined as Neville filters of order (~)N and N, respectively. However, in order to introduce some degrees of freedom in the design, these filters are not defined as the simplest Neville filters. The proposed method is convenient: the same algorithm is used whatever the dimensionality of the signal, and whatever the lattice used. The method is applied to content-based image retrieval (CBIR): an image signature is derived from this new adaptive nonseparable wavelet transform. The method is evaluated on four image databases and compared to a similar CBIR system, based on an adaptive separable wavelet transform. The mean precision at five of the nonseparable wavelet based system is notably higher on three out of the four databases, and comparable on the other one. The proposed method also compares favorably with the dual-tree complex wavelet transform, an overcomplete nonseparable wavelet transform.
Gwenolé Quellec, Mathieu Lamard, Guy Cazuguel, Béatrice Cochener, Christian Roux
IEEE Trans. Image Process.1
2010 Medical case retrieval from a committee of decision trees
abstract
A novel content-based information retrieval framework, designed to cover several medical applications, is presented in this paper. The presented framework allows the retrieval of possibly incomplete medical cases consisting of several images together with semantic information. It relies on a committee of decision trees, decision support tools well suited to process this type of information. In our proposed framework, images are characterized by their digital content. It was applied to two heterogeneous medical datasets for computer-aided diagnoses: a diabetic retinopathy follow-up dataset (DRD) and a mammography-screening dataset (DDSM). Measure of precision among the top five retrieved results of 0.788 + or - 0.137 and 0.869 + or - 0.161 was obtained on DRD and DDSM, respectively. On DRD, for instance, it increases by half the retrieval of single images.
Gwenolé Quellec, Mathieu Lamard, Lynda Bekri, Guy Cazuguel, Christian Roux, Béatrice Cochener
IEEE Trans. Inf. Technol. Biomed.1
2010 Retinopathy Online Challenge: Automatic Detection of Microaneurysms in Digital Color Fundus Photographs
abstract
The detection of microaneurysms in digital color fundus photographs is a critical first step in automated screening for diabetic retinopathy (DR), a common complication of diabetes. To accomplish this detection numerous methods have been published in the past but none of these was compared with each other on the same data. In this work we present the results of the first international microaneurysm detection competition, organized in the context of the Retinopathy Online Challenge (ROC), a multiyear online competition for various aspects of DR detection. For this competition, we compare the results of five different methods, produced by five different teams of researchers on the same set of data. The evaluation was performed in a uniform manner using an algorithm presented in this work. The set of data used for the competition consisted of 50 training images with available reference standard and 50 test images where the reference standard was withheld by the organizers (M. Niemeijer, B. van Ginneken, and M. D. Abràmoff). The results obtained on the test data was submitted through a website after which standardized evaluation software was used to determine the performance of each of the methods. A human expert detected microaneurysms in the test set to allow comparison with the performance of the automatic methods. The overall results show that microaneurysm detection is a challenging task for both the automatic methods as well as the human expert. There is room for improvement as the best performing system does not reach the performance of the human expert. The data associated with the ROC microaneurysm detection competition will remain publicly available and the website will continue accepting submissions.
Meindert Niemeijer, Bram van Ginneken, Michael J. Cree, Atsushi Mizutani, Gwenolé Quellec, Clara I. Sánchez, Bob Zhang 0001, Roberto Hornero, Mathieu Lamard, Chisako Muramatsu, Xiangqian Wu 0002, Guy Cazuguel, Jane You, Agustín Mayo, Qin Li 0001, Yuji Hatanaka, Béatrice Cochener, Christian Roux, Fakhri Karray, María García, Hiroshi Fujita 0001, Michael D. Abràmoff
IEEE Trans. Medical Imaging5
2010 Three-Dimensional Analysis of Retinal Layer Texture: Identification of Fluid-Filled Regions in SD-OCT of the Macula
abstract
Optical coherence tomography (OCT) is becoming one of the most important modalities for the noninvasive assessment of retinal eye diseases. As the number of acquired OCT volumes increases, automating the OCT image analysis is becoming increasingly relevant. In this paper, a method for automated characterization of the normal macular appearance in spectral domain OCT (SD-OCT) volumes is reported together with a general approach for local retinal abnormality detection. Ten intraretinal layers are first automatically segmented and the 3-D image dataset flattened to remove motion-based artifacts. From the flattened OCT data, 23 features are extracted in each layer locally to characterize texture and thickness properties across the macula. The normal ranges of layer-specific feature variations have been derived from 13 SD-OCT volumes depicting normal retinas. Abnormalities are then detected by classifying the local differences between the normal appearance and the retinal measures in question. This approach was applied to determine footprints of fluid-filled regions--SEADs (Symptomatic Exudate-Associated Derangements)--in 78 SD-OCT volumes from 23 repeatedly imaged patients with choroidal neovascularization (CNV), intra-, and sub-retinal fluid and pigment epithelial detachment. The automated SEAD footprint detection method was validated against an independent standard obtained using an interactive 3-D SEAD segmentation approach. An area under the receiver-operating characteristic curve of 0.961 +/- 0.012 was obtained for the classification of vertical, cross-layer, macular columns. A study performed on 12 pairs of OCT volumes obtained from the same eye on the same day shows that the repeatability of the automated method is comparable to that of the human experts. This work demonstrates that useful 3-D textural information can be extracted from SD-OCT scans and--together with an anatomical atlas of normal retinas--can be used for clinically important applications.
Gwenolé Quellec, Kyungmoo Lee, Martin Dolejsi, Mona Kathryn Garvin, Michael D. Abràmoff, Milan Sonka
IEEE Trans. Medical Imaging1
2008 Optimal Wavelet Transform for the Detection of Microaneurysms in Retina Photographs
abstract
In this paper, we propose an automatic method to detect microaneurysms in retina photographs. Microaneurysms are the most frequent and usually the first lesions to appear as a consequence of diabetic retinopathy. So, their detection is necessary for both screening the pathology and follow up (progression measurement). Automating this task, which is currently performed manually, would bring more objectivity and reproducibility. We propose to detect them by locally matching a lesion template in subbands of wavelet transformed images. To improve the method performance, we have searched for the best adapted wavelet within the lifting scheme framework. The optimization process is based on a genetic algorithm followed by Powell's direction set descent. Results are evaluated on 120 retinal images analyzed by an expert and the optimal wavelet is compared to different conventional mother wavelets. These images are of three different modalities: there are color photographs, green filtered photographs, and angiographs. Depending on the imaging modality, microaneurysms were detected with a sensitivity of respectively 89.62%, 90.24%, and 93.74% and a positive predictive value of respectively 89.50%, 89.75%, and 91.67%, which is better than previously published methods.
Gwenolé Quellec, Mathieu Lamard, Pierre Marie Josselin, Guy Cazuguel, Béatrice Cochener, Christian Roux
IEEE Trans. Medical Imaging1