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Fuyuki Shimojo

dblp:59/376 · DBLP profile ↗
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7ranked-venue papers
1as first author
1since 2021 · last 2025
0000-0002-4025-0069ORCID · corroborated

Domains — the database's venue-derived domains; a paper can count in several

Systems, architecture and hardware · 6 · 1 first-author · 1 since 2021

Expertise — from the expertise taxonomy: the topics of the expert's papers under the CCF categories. A weight counts papers with recency: 1 for a paper about the topic, 0.3 when the topic is its context, halved every five years.

Computer architecture, parallel and distributed computing, and storage systems
4 papers
High-performance computing · 58% Hardware accelerators and domain-specific architectures · 39% Distributed systems · 3%
Interdisciplinary, comprehensive, and emerging computing
4 papers
Computational science and engineering · 100%

Topics — the 9 heaviest of 11, each with the papers that count most for it

TopicWeightPapersLastEvidence papers
High-performance computing › supercomputing
exascale computing
0.912025
Multiscale Light-Matter Dynamics in Quantum Materials: From Electrons to Topological Superlattices · SC 2025
Hardware accelerators and domain-specific architectures › machine learning accelerator
low-precision arithmetic
0.912025
Multiscale Light-Matter Dynamics in Quantum Materials: From Electrons to Topological Superlattices · SC 2025
High-performance computing
quantum mechanical simulation
0.312025
Multiscale Light-Matter Dynamics in Quantum Materials: From Electrons to Topological Superlattices · SC 2025
Computational science and engineering › computational chemistry › molecular simulation
molecular dynamics
0.022002
Scalable atomistic simulation algorithms for materials research · SC 2001
Collaborative simulation grid: multiscale quantum-mechanical/classical atomistic simulations on distributed PC clusters in the US and Japan · SC 2002
Distributed systems › distributed interactive applications › collaborative computing
collaborative simulation
0.012002
Collaborative simulation grid: multiscale quantum-mechanical/classical atomistic simulations on distributed PC clusters in the US and Japan · SC 2002
Distributed systems
grid computing
0.012002
Collaborative simulation grid: multiscale quantum-mechanical/classical atomistic simulations on distributed PC clusters in the US and Japan · SC 2002
High-performance computing
multiscale simulation
0.012002
Collaborative simulation grid: multiscale quantum-mechanical/classical atomistic simulations on distributed PC clusters in the US and Japan · SC 2002
High-performance computing
atomistic simulation
0.012001
Scalable atomistic simulation algorithms for materials research · SC 2001
High-performance computing
scientific computing systems
0.012001
Scalable atomistic simulation algorithms for materials research · SC 2001

Methods — techniques the papers use, named apart from their topics

neural-network quantum molecular dynamics · 1.7metamodel-space algebra · 1.7divide-conquer-recombine · 1.7plane-wave basis · 0.4multigrid · 0.4divide-and-conquer density functional theory · 0.4molecular dynamics · 0.1density functional theory · 0.1computation/communication overlapping · 0.1octree-based culling · 0.1
YearPublicationVenuePosition
2025 Multiscale Light-Matter Dynamics in Quantum Materials: From Electrons to Topological Superlattices
abstract
Light-matter dynamics in topological quantum materials enables ultralow-power, ultrafast devices. A challenge is simulating multiple field and particle equations for light, electrons, and atoms over vast spatiotemporal scales on Exaflop/s computers with increased heterogeneity and low-precision focus. We present a paradigm shift that solves the multiscale/multiphysics/heterogeneity challenge harnessing hardware heterogeneity and low-precision arithmetic. Divide-conquer-recombine algorithms divide the problem into not only spatial but also physical subproblems of small dynamic ranges and minimal mutual information, which are mapped onto best-characteristics-matching hardware units, while metamodel-space algebra minimizes communication and precision requirements. Using 60,000 GPUs of Aurora, DC-MESH (divide-and-conquer Maxwell-Ehrenfest-surface hopping) and XS-NNQMD (excited-state neural-network quantum molecular dynamics) modules of MLMD (multiscale light-matter dynamics) software were 152- and 3,780-times faster than the state-of-the-art for 15.4 million-electron and 1.23 trillion-atom PbTiO3 material, achieving 1.87 EFLOP/s for the former. This enabled the first study of light-induced switching of topological superlattices for future ferroelectric ‘topotronics’.
Taufeq Mohammed Razakh, Thomas Linker, Ye Luo 0001, Nariman Piroozan, Simon J. Pennycook, Nalini Kumar, Albert Musaelian, Anders Johansson 0011, Boris Kozinsky, Rajiv K. Kalia, Priya Vashishta, Fuyuki Shimojo, Shinnosuke Hattori, Ken-ichi Nomura, Aiichiro Nakano
SC12
2020 Quantum Dynamics at Scale: Ultrafast Control of Emergent Functional Materials
abstract
Confluence of extreme-scale quantum dynamics simulations (i.e. [email protected]) and cutting-edge x-ray free-electron laser experiments are revolutionizing materials science. An archetypal example is the exciting concept of using picosecond light pulses to control emergent material properties on demand in atomically-thin layered materials. This paper describes efforts to scale our quantum molecular dynamics engine toward the United States' first exaflop/s computer, under an Aurora Early Science Program project named "Metascalable layered material genome". Key algorithmic and computing techniques incorporated are: (1) globally-scalable and locally-fast solvers within a linear-scaling divide-conquer-recombine algorithmic framework; (2) algebraic 'BLASification' of computational kernels; and (3) data alignment and loop restructuring, along with register and cache blocking, for enhanced vectorization and efficient memory access. The resulting weak-scaling parallel efficiency was 0.93 on 131,072 Intel Xeon Phi cores for a 56.6 million atom (or 169 million valence-electron) system, whereas the various code transformations achieved 5-fold speedup. The optimized simulation engine allowed us for the first time to establish a significant effect of substrate on the dynamics of layered material upon electronic excitation.
Subodh Tiwari, Aravind Krishnamoorthy, Pankaj Rajak, Putt Sakdhnagool, Manaschai Kunaseth, Fuyuki Shimojo, Shogo Fukushima, Aiichiro Nakano, Ye Luo 0001, Rajiv K. Kalia, Ken-ichi Nomura, Priya Vashishta
HPC Asia6
2014 Metascalable Quantum Molecular Dynamics Simulations of Hydrogen-on-Demand
abstract
We enabled an unprecedented scale of quantum molecular dynamics simulations through algorithmic innovations. A new lean divide-and-conquer density functional theory algorithm significantly reduces the prefactor of the O(N) computational cost based on complexity and error analyses. A globally scalable and locally fast solver hybridizes a global real-space multigrid with local plane-wave bases. The resulting weak-scaling parallel efficiency was 0.984 on 786,432 IBM Blue Gene/Q cores for a 50.3 million-atom (39.8 trillion degrees-of-freedom) system. The time-to-solution was 60-times less than the previous state-of-the art, owing to enhanced strong scaling by hierarchical band-space domain decomposition and high floating-point performance (50.5% of the peak). Production simulation involving 16,661 atoms for 21,140 time steps (or 129,208 self-consistent-field iterations) revealed a novel nanostructural design for on-demand hydrogen production from water, advancing renewable energy technologies. This metascalable (or "design once, scale on new architectures") algorithm is used for broader applications within a recently proposed divide-conquer-recombine paradigm.
Ken-ichi Nomura, Rajiv K. Kalia, Aiichiro Nakano, Priya Vashishta, Kohei Shimamura, Fuyuki Shimojo, Manaschai Kunaseth, Paul Messina, Nichols A. Romero
SC6
2009 A metascalable computing framework for large spatiotemporal-scale atomistic simulations
abstract
A metascalable (or ldquodesign once, scale on new architecturesrdquo) parallel computing framework has been developed for large spatiotemporal-scale atomistic simulations of materials based on spatiotemporal data locality principles, which is expected to scale on emerging multipetaflops architectures. The framework consists of: (1) an embedded divide-and-conquer (EDC) algorithmic framework based on spatial locality to design linear-scaling algorithms for high complexity problems; (2) a space-time-ensemble parallel (STEP) approach based on temporal locality to predict long-time dynamics, while introducing multiple parallelization axes; and (3) a tunable hierarchical cellular decomposition (HCD) parallelization framework to map these O(N) algorithms onto a multicore cluster based on hybrid implementation combining message passing and critical section-free multithreading. The EDC-STEP-HCD framework exposes maximal concurrency and data locality, thereby achieving: (1) inter-node parallel efficiency well over 0.95 for 218 billion-atom molecular-dynamics and 1.68 trillion electronic-degrees-of-freedom quantum-mechanical simulations on 212,992 IBM BlueGene/L processors (superscalability); (2) high intra-node, multithreading parallel efficiency (nanoscalability); and (3) nearly perfect time/ensemble parallel efficiency (eon-scalability). The spatiotemporal scale covered by MD simulation on a sustained petaflops computer per day (i.e. petaflopsmiddotday of computing) is estimated as NT = 2.14 (e.g. N = 2.14 million atoms for T = 1 microseconds).
Ken-ichi Nomura, Richard Seymour, Weiqiang Wang 0002, Hikmet Dursun, Rajiv K. Kalia, Aiichiro Nakano, Priya Vashishta, Fuyuki Shimojo, Lin H. Yang
IPDPS8
2002 Collaborative simulation grid: multiscale quantum-mechanical/classical atomistic simulations on distributed PC clusters in the US and Japan
abstract
A multidisciplinary,collaborative simulation has been performed on a Grid of geographically distributed PC clusters.The multiscale simulation approach seamlessly combines i) atomistic simulation based on the molecular dynamics (MD) method and ii) quantum mechanical (QM) calculation based on the density functional theory (DFT), so that accurate but less scalable computations are performed only where they are needed. The multiscale MD/QM simulation code has been Grid-enabled using i) a modular, additive hybridization scheme, ii) multiple QM clustering, and iii) computation/communication overlapping. The Gridified MD/QM simulation code has been used to study environmental effects of water molecules on fracture in silicon. A preliminary run of the code has achieved a parallel efficiency of 94% on 25 PCs distributed over 3 PC clusters in the US and Japan, and a larger test involving 154 processors on 5 distributed PC clusters is in progress.
Hideaki Kikuchi, Rajiv K. Kalia, Aiichiro Nakano, Priya Vashishta, Hiroshi Iyetomi, Shuji Ogata, Takahisa Kouno, Fuyuki Shimojo, Kenji Tsuruta, Subhash Saini
SC8
2001 Scalable atomistic simulation algorithms for materials research
abstract
A suite of scalable atomistic simulation programs has been developed for materials research based on space-time multiresolution algorithms. Design and analysis of parallel algorithms are presented for molecular dynamics (MD) simulations and quantum-mechanical (QM) calculations based on the density functional theory. Performance tests have been carried out on 1,088-processor Cray T3E and 1,280-processor IBM SP3 computers. The linear-scaling algorithms have enabled 6.44-billion-atom MD and 111,000-atom QM calculations on 1,024 SP3 processors with parallel efficiency well over 90%. The production-quality programs also feature wavelet-based computational-space decomposition for adaptive load balancing, spacefilling-curve-based adaptive data compression with user-defined error bound for scalable I/O, and octree-based fast visibility culling for immersive and interactive visualization of massive simulation data.
Aiichiro Nakano, Rajiv K. Kalia, Priya Vashishta, Timothy Campbell, Shuji Ogata, Fuyuki Shimojo, Subhash Saini
SC6
2000 A scalable molecular-dynamics algorithm suite for materials simulations: design-space diagram on 1024 Cray T3E processors
Fuyuki Shimojo, Timothy Campbell, Rajiv K. Kalia, Aiichiro Nakano, Priya Vashishta, Shuji Ogata, Kenji Tsuruta
Future Gener. Comput. Syst.1