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S. P. Mielke

dblp:59/6848 · DBLP profile ↗
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1ranked-venue papers
1as first author
0since 2021 · last 2003
—ORCID · none

Domains — the database's venue-derived domains; a paper can count in several

Applied, interdisciplinary, general and emerging computing · 1 · 1 first-author

Expertise — from the expertise taxonomy: the topics of the expert's papers under the CCF categories. A weight counts papers with recency: 1 for a paper about the topic, 0.3 when the topic is its context, halved every five years.

Interdisciplinary, comprehensive, and emerging computing
1 paper
Bioinformatics and computational biology · 100%

Topics — the 4 heaviest of 4, each with the papers that count most for it

TopicWeightPapersLastEvidence papers
Bioinformatics and computational biology › protein structure prediction › protein folding
protein fold prediction
0.012003
Protein structural class identification directly from NMR spectra using averaged chemical shifts · Bioinform. 2003
Bioinformatics and computational biology
protein structure prediction
0.012003
Protein structural class identification directly from NMR spectra using averaged chemical shifts · Bioinform. 2003
Bioinformatics and computational biology › structural biology
NMR spectroscopy
0.012003
Protein structural class identification directly from NMR spectra using averaged chemical shifts · Bioinform. 2003
Bioinformatics and computational biology › structural bioinformatics
protein structure determination
0.012003
Protein structural class identification directly from NMR spectra using averaged chemical shifts · Bioinform. 2003

Methods — techniques the papers use, named apart from their topics

statistical significance analysis · 0.0averaged chemical shift correlation · 0.0
YearPublicationVenuePosition
2003 Protein structural class identification directly from NMR spectra using averaged chemical shifts
abstract
Knowledge of the three-dimensional structure of proteins is integral to understanding their functions, and a necessity in the era of proteomics. A wide range of computational methods is employed to estimate the secondary, tertiary, and quaternary structures of proteins. Comprehensive experimental methods, on the other hand, are limited to nuclear magnetic resonance (NMR) and X-ray crystallography. The full characterization of individual structures, using either of these techniques, is extremely time intensive. The demands of high throughput proteomics necessitate the development of new, faster experimental methods for providing structural information. As a first step toward such a method, we explore the possibility of determining the structural classes of proteins directly from their NMR spectra, prior to resonance assignment, using averaged chemical shifts. This is achieved by correlating NMR-based information with empirical structure-based information available in widely used electronic databases. The results are analyzed statistically for their significance. The robustness of the method as a structure predictor is probed by applying it to a set of proteins of unknown structure. Our results show that this NMR-based method can be used as a low-resolution tool for protein structural class identification.
S. P. Mielke, V. V. Krishnan
Bioinform.1