Intracortical brain-machine interfaces (iBMIs) have enabled movement and speech in people living with paralysis by using neural data to decode behaviors in real-time. However, intracortical neural recordings exhibit significant instabilities over time, which poses problems for iBMIs, neuroscience, and machine learning. For iBMIs, neural instabilities require frequent decoder recalibration to maintain high performance, a critical bottleneck for real-world translation. Several approaches have been developed to address this issue, and the field has recognized the need for standardized datasets on which to compare them, but no standard dataset exists for evaluation over year-long timescales. In neuroscience, a growing body of research attempts to elucidate the latent computations performed by populations of neurons. Nonstationarity in neural recordings imposes significant challenges to the design of these studies, so a dataset containing recordings over large time spans would improve methods to account for instabilities. In machine learning, continuous domain adaptation of temporal data is an area of active research, and a dataset containing shift distributions on long time scales would be beneficial to researchers. To address these gaps, we present the LINK Dataset (Long-term Intracortical Neural activity and Kinematics), which contains intracortical spiking activity and kinematic data from 312 sessions of a non-human primate performing a dexterous, 2 degree-of-freedom finger movement task, spanning 1,242 days. We also present longitudinal analyses of the dataset’s neural spiking activity and its relationship to kinematics, as well as overall decoding performance using linear and neural network models. The LINK dataset (https://dandiarchive.org/dandiset/001201) and code (https://github.com/chesteklab/LINK_dataset) are freely available to the public.

People with brain or spinal cord-related paralysis often need to rely on others for basic tasks, limiting their independence. A potential solution is brain-machine interfaces (BMIs), which could allow them to voluntarily control external devices (e.g., robotic arm) by decoding brain activity to movement commands. In the past decade, deep-learning decoders have achieved state-of-the-art results in most BMI applications, ranging from speech production to finger control. However, the 'black-box' nature of deep-learning decoders could lead to unexpected behaviors, resulting in major safety concerns in real-world physical control scenarios. In these applications, explainable but lower-performing decoders, such as the Kalman filter (KF), remain the norm. In this study, we designed a BMI decoder based on KalmanNet, an extension of the KF that augments its operation with recurrent neural networks to compute the Kalman gain. This results in a varying “trust” that shifts between inputs and dynamics. We used this algorithm to predict finger movements from the brain activity of two monkeys. We compared KalmanNet results offline (pre-recorded data, $n=13$ days) and online (real-time predictions, $n=5$ days) with a simple KF and two recent deep-learning algorithms: tcFNN (non-ReFIT version) and LSTM. KalmanNet achieved comparable or better results than other deep learning models in offline and online modes, relying on the dynamical model for stopping while depending more on neural inputs for initiating movements. We further validated this mechanism by implementing a heteroscedastic KF that used the same strategy, and it also approached state-of-the-art performance while remaining in the explainable domain of standard KFs. However, we also see two downsides to KalmanNet. KalmanNet shares the limited generalization ability of existing deep-learning decoders, and its usage of the KF as an inductive bias limits its performance in the presence of unseen noise distributions. Despite this trade-off, our analysis successfully integrates traditional controls and modern deep-learning approaches to motivate high-performing yet still explainable BMI designs.

Intracortical brain-computer interfaces (iBCIs) can restore movement and communication abilities to individuals with paralysis by decoding their intended behavior from neural activity recorded with an implanted device. While this activity yields high-performance decoding over short timescales, neural data is often nonstationary, which can lead to decoder failure if not accounted for. To maintain performance, users must frequently recalibrate decoders, which requires the arduous collection of new neural and behavioral data. Aiming to reduce this burden, several approaches have been developed that either limit recalibration data requirements (few-shot approaches) or eliminate explicit recalibration entirely (zero-shot approaches). However, progress is limited by a lack of standardized datasets and comparison metrics, causing methods to be compared in an ad hoc manner. Here we introduce the FALCON benchmark suite (Few-shot Algorithms for COnsistent Neural decoding) to standardize evaluation of iBCI robustness. FALCON curates five datasets of neural and behavioral data that span movement and communication tasks to focus on behaviors of interest to modern-day iBCIs. Each dataset includes calibration data, optional few-shot recalibration data, and private evaluation data. We implement a flexible evaluation platform which only requires user-submitted code to return behavioral predictions on unseen data. We also seed the benchmark by applying baseline methods spanning several classes of possible approaches. FALCON aims to provide rigorous selection criteria for robust iBCI decoders, easing their translation to real-world devices. https://snel-repo.github.io/falcon/

Brain-machine interfaces (BMIs) can restore motor function to people with paralysis but are currently limited by the accuracy of real-time decoding algorithms. Recurrent neural networks (RNNs) using modern training techniques have shown promise in accurately predicting movements from neural signals but have yet to be rigorously evaluated against other decoding algorithms in a closed-loop setting. Here we compared RNNs to other neural network architectures in real-time, continuous decoding of finger movements using intracortical signals from nonhuman primates. Across one and two finger online tasks, LSTMs (a type of RNN) outperformed convolutional and transformer-based neural networks, averaging 18% higher throughput than the convolution network. On simplified tasks with a reduced movement set, RNN decoders were allowed to memorize movement patterns and matched able-bodied control. Performance gradually dropped as the number of distinct movements increased but did not go below fully continuous decoder performance. Finally, in a two-finger task where one degree-of-freedom had poor input signals, we recovered functional control using RNNs trained to act both like a movement classifier and continuous decoder. Our results suggest that RNNs can enable functional real-time BMI control by learning and generating accurate movement patterns.

Currently available prosthetic hands are capable of actuating anywhere from five to 30 degrees of freedom (DOF). However, grasp control of these devices remains unintuitive and cumbersome. To address this issue, we propose directly extracting finger commands from the neuromuscular system. Two persons with transradial amputations had bipolar electrodes implanted into regenerative peripheral nerve interfaces (RPNIs) and residual innervated muscles. The implanted electrodes recorded local electromyography with large signal amplitudes. In a series of single-day experiments, participants used a high speed movement classifier to control a virtual prosthetic hand in real-time. Both participants transitioned between 10 pseudo-randomly cued individual finger and wrist postures with an average success rate of 94.7% and trial latency of 255 ms. When the set was reduced to five grasp postures, metrics improved to 100% success and 135 ms trial latency. Performance remained stable across untrained static arm positions while supporting the weight of the prosthesis. Participants also used the high speed classifier to switch between robotic prosthetic grips and complete a functional performance assessment. These results demonstrate that pattern recognition systems can use intramuscular electrodes and RPNIs for fast and accurate prosthetic grasp control.

We report a high-rate, low-power wireless transmission system (named HermesD) to aid the research in neural prosthetics for motor disabilities, by recording and transmitting neural activity from electrode arrays implanted in rhesus monkeys. This system supports the simultaneous transmission of 32 channels of broadband data sampled at 30 kSps, 12 bit/sample, using FSK modulation on a 3.95 GHz carrier, with a link range extending over 20 m. The channel rate is 24 Mbit/s and the bit stream includes synchronization and error detection mechanisms. The power consumption, approximately 142 mW, is low enough to allow the system to operate for about two days, using two 3.7 V / 1100 mAh Li-Ion battery packs. The transmitter was designed using off-the-shelf components and is small enough to fit on a printed circuit board with 20 cm2. The receiver is composed of several submodules in a bench-top configuration and interfaced to a computer for data storage and processing. This system can be easily scaled up in terms of the number of channels and data rate, being an appropriate test platform for a future 96-channel version of the system.

Neural prosthetics for motor systems is a rapidly growing field with the potential to provide treatment for amputees or patients suffering from neurological injury and disease. To determine whether a physically active patient such as an amputee can take advantage of these systems, we seek to develop an animal model of freely moving humans. Therefore, we have developed and tested HermesC, a system for recording neural activity from electrode arrays implanted in rhesus monkeys and transmitting this data wirelessly. This system is based on the integrated neural interface (INI) microchip, which amplifies, digitizes, and transmits neural data across a ~900 MHz wireless channel. The wireless transmission has a range of ~4 m in free space. All together, this device consumes 11.7 mA from a 4.0 V lithium ion battery pack for a total of 46.8 mW. To test the performance, the device was used to record and telemeter one channel of broadband neural data at 15.7 kSps from one monkey doing various physical activities in a home cage, such as eating, climbing and swinging. The in-band noise of the recorded neural signal is 34 muVrms, which is low enough to allow the detection of neural units on an active electrode. This system can be readily upgraded to use future generations of the INI chip, with circuits providing 96 channels of programmable threshold crossing event data.

We present experimental results from an integrated circuit designed for wireless neural recording applications. The chip, which was fabricated in a 0.6-mum 2P3M BiCMOS process, contains 100 amplifiers and a 10-bit ADC and 902-928 MHz FSK transmitter. Neural signals from one amplifier are sampled by the ADC at 15.7 kSps and telemetered over the FSK wireless data link. Power, clock, and command signals are sent to the chip wirelessly over a 2.765-MHz inductive (coil-to-coil) link. The chip is capable of operating with only two off-chip components: a power receive coil and a 100-nF capacitor.