In this paper we introduce the concept of correlating genetic variations in an individual's specific genetic code (DNA) and facial morphology. This is the first step in the research effort to estimate facial appearance from DNA samples, which is gaining momentum within intelligence, law enforcement and national security communities. The dataset for the study consisting of genetic data and 3D facial scans (phenotype) data was obtained through the FaceBase Consortium. The proposed approach has three main steps: phenotype feature extraction from 3D face images, genotype feature extraction from a DNA sample, and genome-wide association analysis to determine genetic variations that contribute to facial structure and appearance. Results indicate that there exist significant correlations between genetic information and facial structure. We have identified 30 single nucleotide polymorphisms (SNPs), i.e. genetic variations, that significantly contribute to facial structure and appearance. We conclude with a preliminary attempt at facial reconstruction from the genetic data and emphasize on the complexity of the problem and the challenges encountered.

MicroRNAs are important regulators of gene expression, acting primarily by binding to sequence-specific locations on already transcribed messenger RNAs (mRNA) and typically down-regulating their stability or translation. Recent studies indicate that microRNAs may also play a role in up-regulating mRNA transcription levels, although a definitive mechanism has not been established. Double-helical DNA is capable of forming triple-helical structures through Hoogsteen and reverse Hoogsteen interactions in the major groove of the duplex, and we show physical evidence (i.e., NMR, FRET, SPR) that purine or pyrimidine-rich microRNAs of appropriate length and sequence form triple-helical structures with purine-rich sequences of duplex DNA, and identify microRNA sequences that favor triplex formation. We developed an algorithm (Trident) to search genome-wide for potential triplex-forming sites and show that several mammalian and non-mammalian genomes are enriched for strong microRNA triplex binding sites. We show that those genes containing sequences favoring microRNA triplex formation are markedly enriched (3.3 fold, p<2.2 × 10(-16)) for genes whose expression is positively correlated with expression of microRNAs targeting triplex binding sequences. This work has thus revealed a new mechanism by which microRNAs could interact with gene promoter regions to modify gene transcription.

UNLABELLED: The BioEnergy Science Center (BESC) is undertaking large experimental campaigns to understand the biosynthesis and biodegradation of biomass and to develop biofuel solutions. BESC is generating large volumes of diverse data, including genome sequences, omics data and assay results. The purpose of the BESC Knowledgebase is to serve as a centralized repository for experimentally generated data and to provide an integrated, interactive and user-friendly analysis framework. The Portal makes available tools for visualization, integration and analysis of data either produced by BESC or obtained from external resources. AVAILABILITY: http://besckb.ornl.gov.

Summary form only given. We highlight a fruitful interplay between biology and computation. The sequencing of complete genomes from multiple organisms has revealed that most differences in organism complexity are due to elements of gene regulation that reside in the non protein coding portions of genes. Both within and between species, transcription factor binding sites and the proteins that recognize them govern the activity of cellular pathways that mediate adaptive responses and survival. Experimental identification of these regulatory elements is by nature a slow process. The availability of complete genomic sequences, however, opens the door for computational methods to predict binding sites and expedite our understanding of gene regulation at a genomic level. Just as with traditional experimental approaches, the computational identification of the molecular factors that control a gene's expression level has been problematic. As a case in point, the identification of putative motifs is a challenging combinatorial task. For it, powerful new motif finding algorithms and high performance implementations are described. Heavy use is made of graph algorithms, some of which are exceedingly computationally intensive and involve the use of emergent mathematical methods. An approach to fully dynamic load balancing is developed in order to make effective use of highly parallel platforms.

Abstract The development of computing systems with large numbers of processors has been motivated primarily by the need to solve large, complex problems more quickly than is possible with uniprocessor systems. Traditionally, multiprocessor systems have been uniprogrammed, i.e., dedicated to the execution of a single set of related processes, since this approach provides the fastest response for an individual program once it begins execution. However, if the goal of a multiprocessor system is to minimize average response time or to maximize throughput, then multiprogramming must be considered. In this paper, a model of a simple multiprocessor system with a two‐program workload is reviewed; the model is then applied to an Intel iPSC/2 hypercube multiprocessor with a workload consisting of parallel wavefront algorithms for solving triangular systems of linear equations. Throughputs predicted by the model are compared with throughputs obtained experimentally from an actual system. The results provide validation for the model and indicate that significant performance improvements for multiprocessor systems are possible through multiprogramming.