Demonstration venue · read-only. Every page can be browsed; the buttons that would change it are switched off. Create an account to run TaxoReview on your own data. A simulation from public publication records: the people listed were not invited and did not agree to review.
? Tutorial for this page

Jan Kolomazník

dblp:64/10536 · DBLP profile ↗
← Back
3ranked-venue papers
0as first author
1since 2021 · last 2021
—ORCID · conflict

Domains — the database's venue-derived domains; a paper can count in several

Applied, interdisciplinary, general and emerging computing · 3 · 1 since 2021

Expertise — from the expertise taxonomy: the topics of the expert's papers under the CCF categories. A weight counts papers with recency: 1 for a paper about the topic, 0.3 when the topic is its context, halved every five years.

Interdisciplinary, comprehensive, and emerging computing
2 papers
Bioinformatics and computational biology · 100%

Topics — the 2 heaviest of 3, each with the papers that count most for it

TopicWeightPapersLastEvidence papers
Bioinformatics and computational biology › RNA biology › RNA analysis › RNA bioinformatics › RNA structure prediction
g-quadruplex prediction
0.522020
G4Hunter web application: a web server for G-quadruplex prediction · Bioinform. 2019
G4Killer web application: a tool to design G-quadruplex mutations · Bioinform. 2020
Bioinformatics and computational biology › structural bioinformatics
nucleic acid structure analysis
0.112019
G4Hunter web application: a web server for G-quadruplex prediction · Bioinform. 2019

Methods — techniques the papers use, named apart from their topics

g4hunter algorithm · 0.8
YearPublicationVenuePosition
2021 EO4SD Disaster Risk Reduction Terrain Motion Products in Support of the City Resilience Program
abstract
An effort is made herein to demonstrate advanced terrain motion products obtained via operational SAR interferometric services running on the Geohazards Exploitation Platform to support the World Bank's City Resilience Program. The objective is to highlight the validity of medium resolution terrain motion products for the provision of systematic terrain motion analysis to operational teams, allowing for the prompt identification of potential hazardous phenomena over wide areas. The challenge is to inform the City Resilience Program and its connected operational teams about urban hazards in a rapid manner in order to capably guide their investment plans in resilience. Such services, combined with tailored capacity building activities, pave the way for the use of a platform-based InSAR solution directly by EO practitioners and end-users for the purpose of monitoring cities according to various concerns. The introduction of online tools expands and scales the skills of technical staff of local authorities and relevant agencies while increasing their acceptance of Earth Observation and its solutions.
Michael Foumelis, Alberto Lorenzo-Alonso, Ross Eisenberg, Ángel Utanda, Christoph Aubrecht, Philippe Bally, Jan Kolomazník, Vincenzo Massimi, Steven Rubinyi, Francisco Cano Gonzalez, María E. Aulló-Maestro, Francesco Casu, Fabrizio Pacini
IGARSS7
2020 G4Killer web application: a tool to design G-quadruplex mutations
abstract
MOTIVATION: G-quadruplexes (G4) are important regulatory non-B DNA structures with therapeutic potential. A tool for rational design of mutations leading to decreased propensity for G4 formation should be useful in studying G4 functions. Although tools exist for G4 prediction, no easily accessible tool for the rational design of G4 mutations has been available. RESULTS: We developed a web-based tool termed G4Killer that is based on the G4Hunter algorithm. This new tool is a platform-independent and user-friendly application to design mutations crippling G4 propensity in a parsimonious way (i.e., keeping the primary sequence as close as possible to the original one). The tool is integrated into our DNA analyzer server and allows for generating mutated DNA sequences having the desired lowered G4Hunter score with minimal mutation steps. AVAILABILITY AND IMPLEMENTATION: The G4Killer web tool can be accessed at: http://bioinformatics.ibp.cz. SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online.
Václav Brázda, Jan Kolomazník, Jean-Louis Mergny, Jiri Stastny
Bioinform.2
2019 G4Hunter web application: a web server for G-quadruplex prediction
abstract
MOTIVATION: Expanding research highlights the importance of guanine quadruplex structures. Therefore, easy-accessible tools for quadruplex analyses in DNA and RNA molecules are important for the scientific community. RESULTS: We developed a web version of the G4Hunter application. This new web-based server is a platform-independent and user-friendly application for quadruplex analyses. It allows retrieval of gene/nucleotide sequence entries from NCBI databases and provides complete characterization of localization and quadruplex propensity of quadruplex-forming sequences. The G4Hunter web application includes an interactive graphical data representation with many useful options including visualization, sorting, data storage and export. AVAILABILITY AND IMPLEMENTATION: G4Hunter web application can be accessed at: http://bioinformatics.ibp.cz. SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online.
Václav Brázda, Jan Kolomazník, Jirí Lýsek, Martin Bartas, Miroslav Fojta, Jiri Stastny, Jean-Louis Mergny
Bioinform.2