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Mahmut Selman Sakar

dblp:64/8365 · DBLP profile ↗
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12ranked-venue papers
2as first author
1since 2021 · last 2024
0000-0002-7226-3382ORCID · verified

Domains — the database's venue-derived domains; a paper can count in several

Artificial intelligence and machine learning · 11 · 2 first-author · 1 since 2021Systems, architecture and hardware · 11 · 2 first-author · 1 since 2021Applied, interdisciplinary, general and emerging computing · 1

Expertise — from the expertise taxonomy: the topics of the expert's papers under the CCF categories. A weight counts papers with recency: 1 for a paper about the topic, 0.3 when the topic is its context, halved every five years.

Artificial intelligence
9 papers
Robot manipulation · 88% Video understanding and tracking · 6% Multi-agent systems · 6%
Interdisciplinary, comprehensive, and emerging computing
5 papers
Medical and health informatics · 94% Bioinformatics and computational biology · 6%
Computer graphics and multimedia
1 paper
Computational fabrication · 100%

Topics — the 15 heaviest of 18, each with the papers that count most for it

TopicWeightPapersLastEvidence papers
Robotics › Robot manipulation › micro/nano robotics
microrobot
0.412019
Compound micromachines powered by acoustic streaming · ICRA 2019
Computational fabrication
microfabrication
0.412019
Compound micromachines powered by acoustic streaming · ICRA 2019
Robotics › Robot manipulation
micro/nano manipulation
0.222011
Wireless manipulation of single cells using magnetic microtransporters · ICRA 2011
Biosensing and actuation for microbiorobots · ICRA 2010
Robotics › Robot manipulation › actuator design
tendon-driven actuation
0.212024
A Flat Tendon-Driven Continuum Microrobot for Brain Interventions · ICRA 2024
Computer vision › Video understanding and tracking › object tracking › 3d object tracking
depth-based object tracking
0.212013
Three-dimensional, automated magnetic biomanipulation with subcellular resolution · ICRA 2013
Robotics › Robot manipulation › micromanipulation
magnetic manipulation
0.212013
Three-dimensional, automated magnetic biomanipulation with subcellular resolution · ICRA 2013
Medical and health informatics
cell manipulation
0.112012
Automated biomanipulation of single cells · ICRA 2012
Medical and health informatics › medical robotics
magnetic microrobot
0.112012
Automated biomanipulation of single cells · ICRA 2012
Robotics › Robot manipulation › micromanipulation
cell manipulation
0.112011
Wireless manipulation of single cells using magnetic microtransporters · ICRA 2011
Knowledge, reasoning and agents › Multi-agent systems › swarm robotics
collective transport
0.112011
Experimental Study and Modeling of Group Retrieval in Ants as an Approach to Collective Transport in Swarm Robotic Systems · Proc. IEEE 2011
Robotics › Robot manipulation
grasping
0.112011
Experimental Study and Modeling of Group Retrieval in Ants as an Approach to Collective Transport in Swarm Robotic Systems · Proc. IEEE 2011
Robotics › Robot manipulation
micromanipulation
0.012013
Assessment of protein binding with magnetic microrobots in fluid · ICRA 2013
Knowledge, reasoning and agents › Multi-agent systems
swarm robotics
0.012011
Experimental Study and Modeling of Group Retrieval in Ants as an Approach to Collective Transport in Swarm Robotic Systems · Proc. IEEE 2011
Medical and health informatics › drug delivery
targeted drug delivery
0.012011
Wireless manipulation of single cells using magnetic microtransporters · ICRA 2011
Bioinformatics and computational biology
synthetic biology
0.012010
Biosensing and actuation for microbiorobots · ICRA 2010

Methods — techniques the papers use, named apart from their topics

microfabrication · 1.0magnetic actuation · 0.9programmable projector · 0.8in situ polymerization · 0.8acoustic streaming · 0.8self-folding · 0.4NIR light actuation · 0.4force microscopy · 0.3depth tracking algorithm · 0.3antibody-coated microbead probe · 0.3fluorescence tracking · 0.1mathematical modeling · 0.1electrokinetic actuation · 0.1
YearPublicationVenuePosition
2024 A Flat Tendon-Driven Continuum Microrobot for Brain Interventions
abstract
Navigating biomedical instruments inside the brain remains challenging and high-risk. The delicate nature of the tissues involved requires the development of cutting-edge robotic technologies to enhance precision and safety. In response to these demands, this paper presents a novel ribbon-shaped, tendon-driven continuum microrobot designed explicitly to navigate through brain tissues. The microrobot has a cross-sectional area of 1 mm2, and its design is readily compatible with conventional microfabrication techniques for further miniaturization. The flat geometry aims to provide superior maneuverability and opens up new challenges for modeling and control. We detail the design methodology and fabrication, followed by in vitro characterization and testing within brain tissue phantoms.
Lorenzo Noseda, Addison Liu, Lucio Pancaldi, Mahmut Selman Sakar
ICRA4
2019 Compound micromachines powered by acoustic streaming
abstract
This paper presents the design, fabrication, and operation of compound micromachines powered by acoustic streaming. The machine components were directly incorporated around pillars serving as shafts without further assembly steps using a single-step in situ polymerization process controlled by a programmable projector. Two strategies were presented for harvesting acoustic energy using sharp-edged structures. The first method is based on on-board pumping of fluids and the second method involves engineering of rotors. The implementation of these strategies resulted in the construction of microscale turbines and engines that can be coupled to gear trains for adaptable transmission of mechanical power. We provide a number of further improvements that may together lead to development of compact yet powerful robotic manipulation systems inside microfluidic devices.
Murat Kaynak, Furkan Ayhan, Mahmut Selman Sakar
ICRA3
2016 Magnetic microrobots with addressable shape control
abstract
Shape shifting soft microrobots are generated from self-folding hydrogel bilayer structures. The folding conditions are analyzed to develop an optimal strategy for producing desired three-dimensional shapes. We present two different methods for programming magnetization in these microrobots that are variant and invariant to folding. The microrobots can be navigated through user-defined trajectories using rotating magnetic fields, and the morphing in response to temperature changes can be tuned for adaptive behavior. On-demand modulation of the mobility of individual microrobots is demonstrated by morphing their shape using selective near infrared light (NIR) exposure.
Hen-Wei Huang, Mahmut Selman Sakar, Katharina Riederer, Naveen Shamsudhin, Andrew J. Petruska, Salvador Pané, Bradley J. Nelson
ICRA2
2014 Self-folding mobile microrobots for biomedical applications
abstract
The presented microrobotic platform combines the advantages of self-folding NIR light sensitive polymer bilayers, magnetic alginate microbeads, and a 3D manipulation system and introduces a solution for targeted, on-demand drug and cell delivery. First feasibility studies are presented together with the potential of the full design.
Stefano Fusco, Mahmut Selman Sakar, Stephen Kennedy, Christian Peters, Salvador Pané, David Mooney, Bradley J. Nelson
ICRA2
2014 High-throughput analysis of the morphology and mechanics of tip growing cells using a microrobotic platform
abstract
We present a microrobotic platform that combines MEMS-based capacitive force sensing technology, a dual-stage positioning system and a real-time control and acquisition architecture with computer vision automation to manipulate and mechanically characterize growing plant cells. The topography accuracy of the system, using a silicon wafer sample is measured to be 28 nm(1σ, 200Hz). With an SI-traceable stiffness reference we estimate the accuracy of the RT-CFM to be 3.49%. The target locations are selected from an interactive image of the workspace, and the sensing tip is positioned at each location using visual servoing techniques. Topography and stiffness maps were successfully obtained on growing pollen tubes. With the proposed system, cells can be mechanically stimulated at high speeds and with high precision while the intracellular components are visualized using confocal imaging. The system offers a versatile solution for dexterous and high-throughput characterization of biological specimen.
Dimitrios Felekis, Hannes Vogler, Geraldo Mecja, Simon Muntwyler, Mahmut Selman Sakar, Ueli Grossniklaus, Bradley J. Nelson
IROS5
2013 Three-dimensional, automated magnetic biomanipulation with subcellular resolution
abstract
In our previous work we introduced the inverted MiniMag, a magnetic manipulation system capable of 5 degree-of-freedom (5-DOF) wireless control of micro- and nano structures. In this work, we implement a depth tracking algorithm to provide feedback on the z-position of manipulated particles in the absence of a side camera. We demonstrate 3D closed-loop servoing of magnetic microbeads along predefined trajectories. We successfully position magnetic microbeads functionalized with antibodies in close proximity to macrophages with sub-cellular resolution and record the phagocytosis of the beads. We also show that the system can be used for 3D targeted microtissue manipulation inside microfabricated devices.
Simone Schürle, Mahmut Selman Sakar, Alessandro Meo, Jens Möller, Bradley Kratochvil, Christopher S. Chen, Viola Vogel, Bradley J. Nelson
ICRA2
2013 Assessment of protein binding with magnetic microrobots in fluid
abstract
For applications such as targeting therapeutic nanocarriers to specific tissues, as well as for the more general problem of assessing binding affinity between proteins, it is important to discover tools which may be used for both micromanipulation as well as force microscopy. In this work, we measure picoscale forces using microscale robots, using antibody-coated microbead probes as an interface. We develop a model for a detailed understanding of the relationship between robot velocity and applied force, and apply this to the measurement of binding forces between antibody-coated beads and protein-coated glass slides. We also verify binding between specific antibody/protein combinations relative to untargeted control combinations, and we measure the rate at which this binding occurs. This offers a truly novel technique for measuring binding forces between proteins.
Edward B. Steager, Blaine Zern, Mahmut Selman Sakar, Vladimir Muzykantov, Vijay Kumar 0001
ICRA3
2012 Automated biomanipulation of single cells
abstract
Transport of individual cells or chemical payloads on a subcellular scale is an enabling tool for the study of cellular communication, cell migration, and other localized phenomena. We present a magnetically actuated robotic system for the fully automated manipulation of cells and microbeads. Our strategy uses autofluorescent robotic transporters and fluorescently labeled microbeads to aid tracking and control in optically obstructed environments. We demonstrate automated delivery of microbeads infused with chemicals to specified positions on neurons.
Edward B. Steager, Mahmut Selman Sakar, Ceridwen Magee, Monroe Kennedy III, Anthony Cowley, Vijay Kumar 0001
ICRA2
2011 Wireless manipulation of single cells using magnetic microtransporters
abstract
For such biomedical applications as single cell manipulation and targeted delivery of chemicals, it is important to fabricate microstructures that can be powered and controlled without a tether in fluidic environments. In this work, we describe the construction and operation of micronsized, biocompatible ferromagnetic microtransporters driven by external magnetic fields capable of exerting forces at the pico Newton scale. We develop microtransporters using a simple, single step micro fabrication technique that allows us to produce large numbers in the same step. We also fabricate microgels to deliver drugs. We demonstrate that the microtransporters can be navigated to separate individual targeted cells with micron-scale precision, and deliver microgels without disturbing the cells in the neighborhood and the local microenvironment.
Mahmut Selman Sakar, Edward B. Steager, Anthony Cowley, Vijay Kumar 0001, George J. Pappas
ICRA1
2011 Experimental Study and Modeling of Group Retrieval in Ants as an Approach to Collective Transport in Swarm Robotic Systems
abstract
Group food retrieval in some ant species serves as a useful paradigm for multirobot collective transport strategies that are decentralized, scalable, and do not require a priori information about the payload. We present a comprehensive overview of group retrieval in ants and investigate this phenomenon in Aphaenogaster cockerelli in order to extract the ants' roles during transport, the rules that govern their actions, and the individual forces that they apply to guide a food item to their nest. To measure these forces, we fabricated elastic structures with calibrated stiffness properties, induced ants to retrieve the structures, and tracked the resulting deformations with a camera. We then developed a hybrid system model of the ant behaviors that were observed in the experiments. We conducted simulations of the behavioral model that incorporate a quasi-static model of planar manipulation with compliant attachment points. Our simulations qualitatively replicate individual ant activity as well as certain macroscopic features of the transport.
Spring Berman, Quentin Lindsey, Mahmut Selman Sakar, Vijay Kumar 0001, Stephen Pratt
Proc. IEEE3
2010 Biosensing and actuation for microbiorobots
abstract
In this paper, we describe how signaling networks and actuation in bacterial cells and biomolecular networks of bacteria can be used to develop an integrated micro-bio-robotic system. SU8 microstructures blotted with swarmer cells of Serratia Marcescens in a monolayer are propelled by the bacteria in the absence of any environmental stimulus. We call such microstructures with bacteria Micro Bio Robots (MBRs) and the uncontrolled motion in the absence of stimuli self actuation. Our paper has two primary contributions. First, we demonstrate the control of MBRs using self-actuation, DC electric fields and ultra-violet radiation, and develop experimentally validated mathematical model for the MBRs. This model allows us to use self-actuation and electrokinetic actuation to steer the MBR to any position and orientation in a planar micro channel. Second, we describe the development of biosensors for the MBRs. This is done by attaching genetically engineered Escherichia coli cells that are capable of sensing nonmetabolizable lactose analog methyl-β-D-thiogalactoside (TMG). We describe the fabrication process for MBRs and show experimental results demonstrating sensing, actuation and control.
Mahmut Selman Sakar, Edward B. Steager, A. Agung Julius, MinJun Kim 0001, Vijay Kumar 0001, George J. Pappas
ICRA1
2009 Harnessing bacterial power in microscale actuation
abstract
This paper presents a systematic analysis of the motion of microscale structures actuated by flagellated bacteria. We perform the study both experimentally and theoretically. We use a blotting procedure to attach flagellated bacteria to a buoyancy-neutral plate called a microbarge. The motion of the plate depends on the distribution of the cells on the plate and the stimuli from the environment. We construct a stochastic mathematical model for the system, based on the assumption that the behavior of each bacterium is random and independent of that of its neighbors. The main finding of the paper is that the motion of the barge plus bacteria system is a function of a very small set of parameters. This reduced-dimensional model can be easily estimated using experimental data. We show that the simulation results obtained from the model show an excellent match with the experimentally-observed motion of the barge.
A. Agung Julius, Mahmut Selman Sakar, Edward B. Steager, U. Kei Cheang, MinJun Kim 0001, Vijay Kumar 0001, George J. Pappas
ICRA2