Eileen Koski

dblp:67/11500 · DBLP profile ↗
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9ranked-venue papers
2as first author
6since 2021 · last 2026
0000-0003-3621-9613ORCID · corroborated

Domains — the database's venue-derived domains; a paper can count in several

Applied, interdisciplinary, general and emerging computing · 9 · 2 first-author · 6 since 2021
YearPublicationVenuePosition
2026 From genes to trajectories: mapping genetic influences on Huntington's disease progression
abstract
MOTIVATION: There are many diseases with established genetic factors, such as Huntington's disease (HD), that are characterized by variable rates of progression. However, beyond the contribution of the known genetic factors - in this case the Huntingtin (HTT) gene - the impact of the full human genome on the natural progression of such diseases throughout a patient's life remains largely unknown. The increased availability of genome wide association (GWA) data in HD gene expansion carriers (HDGECs), combined with the clinical assessment scores on the same set of patients, has provided a perfect opportunity to assess the potentially broader genetic impact on the natural progression of HD. RESULTS: We present a genetics-driven, probabilistic disease progression model designed to identify and investigate the ways in which a range of genetic factors affect the natural progression of HD. When applied to a clinico-genomic HD dataset, our model identified several single nucleotide polymorphisms (SNPs) with previously unreported effects on disease progression that act at distinct stages and with varying magnitudes. This discovery may shed light on the potential mechanistic impact of previously unidentified genes on HD that may have implications for clinical management. As increasing amounts of GWA data become available more generally, we anticipate that this modeling framework will be broadly applicable to other diseases with strong genetic components. AVAILABILITY AND IMPLEMENTATION: The source code for IHDPM is available at https://github.com/BiomedSciAI/IHDPM.
Sanjoy Dey, Zhaonan Sun, John Warner, Eileen Koski, Elif Eyigöz, Swati Sathe, Cristina Sampaio, Jianying Hu
Bioinform.4
2025 Towards responsible artificial intelligence in healthcare - getting real about real-world data and evidence
abstract
BACKGROUND: The use of real-world data (RWD) in artificial intelligence (AI) applications for healthcare offers unique opportunities but also poses complex challenges related to interpretability, transparency, safety, efficacy, bias, equity, privacy, ethics, accountability, and stakeholder engagement. METHODS: A multi-stakeholder expert panel comprising healthcare professionals, AI developers, policymakers, and other stakeholders was assembled. Their task was to identify critical issues and formulate consensus recommendations, focusing on the responsible use of RWD in healthcare AI. The panel's work involved an in-person conference and workshop and extensive deliberations over several months. RESULTS: The panel's findings revealed several critical challenges, including the necessity for data literacy and documentation, the identification and mitigation of bias, privacy and ethics considerations, and the absence of an accountability structure for stakeholder management. To address these, the panel proposed a series of recommendations, such as the adoption of metadata standards for RWD sources, the development of transparency frameworks and instructional labels likened to "nutrition labels" for AI applications, the provision of cross-disciplinary training materials, the implementation of bias detection and mitigation strategies, and the establishment of ongoing monitoring and update processes. CONCLUSION: Guidelines and resources focused on the responsible use of RWD in healthcare AI are essential for developing safe, effective, equitable, and trustworthy applications. The proposed recommendations provide a foundation for a comprehensive framework addressing the entire lifecycle of healthcare AI, emphasizing the importance of documentation, training, transparency, accountability, and multi-stakeholder engagement.
Eileen Koski, Amar K. Das, Pei-Yun Sabrina Hsueh, Tony Solomonides, Amanda L. Joseph, Gyana Srivastava, Carl Erwin Johnson, Joseph L. Kannry, Bilikis Oladimeji, Amy Price, Steven E. Labkoff, Gnana Bharathy, Baihan Lin, Douglas B. Fridsma, Lee A. Fleisher, Mónica López-González, Reva Singh, Mark G. Weiner, Robert Stolper, Russell Baris, Suzanne Sincavage, Tristan Naumann, Tayler Williams, Tien Thi Thuy Bui, Yuri Quintana
J. Am. Medical Informatics Assoc.1
2024 Toward a responsible future: recommendations for AI-enabled clinical decision support
abstract
BACKGROUND: Integrating artificial intelligence (AI) in healthcare settings has the potential to benefit clinical decision-making. Addressing challenges such as ensuring trustworthiness, mitigating bias, and maintaining safety is paramount. The lack of established methodologies for pre- and post-deployment evaluation of AI tools regarding crucial attributes such as transparency, performance monitoring, and adverse event reporting makes this situation challenging. OBJECTIVES: This paper aims to make practical suggestions for creating methods, rules, and guidelines to ensure that the development, testing, supervision, and use of AI in clinical decision support (CDS) systems are done well and safely for patients. MATERIALS AND METHODS: In May 2023, the Division of Clinical Informatics at Beth Israel Deaconess Medical Center and the American Medical Informatics Association co-sponsored a working group on AI in healthcare. In August 2023, there were 4 webinars on AI topics and a 2-day workshop in September 2023 for consensus-building. The event included over 200 industry stakeholders, including clinicians, software developers, academics, ethicists, attorneys, government policy experts, scientists, and patients. The goal was to identify challenges associated with the trusted use of AI-enabled CDS in medical practice. Key issues were identified, and solutions were proposed through qualitative analysis and a 4-month iterative consensus process. RESULTS: Our work culminated in several key recommendations: (1) building safe and trustworthy systems; (2) developing validation, verification, and certification processes for AI-CDS systems; (3) providing a means of safety monitoring and reporting at the national level; and (4) ensuring that appropriate documentation and end-user training are provided. DISCUSSION: AI-enabled Clinical Decision Support (AI-CDS) systems promise to revolutionize healthcare decision-making, necessitating a comprehensive framework for their development, implementation, and regulation that emphasizes trustworthiness, transparency, and safety. This framework encompasses various aspects including model training, explainability, validation, certification, monitoring, and continuous evaluation, while also addressing challenges such as data privacy, fairness, and the need for regulatory oversight to ensure responsible integration of AI into clinical workflow. CONCLUSIONS: Achieving responsible AI-CDS systems requires a collective effort from many healthcare stakeholders. This involves implementing robust safety, monitoring, and transparency measures while fostering innovation. Future steps include testing and piloting proposed trust mechanisms, such as safety reporting protocols, and establishing best practice guidelines.
Steven E. Labkoff, Bilikis Oladimeji, Joseph L. Kannry, Tony Solomonides, Russell Leftwich, Eileen Koski, Amanda L. Joseph, Mónica López-González, Lee A. Fleisher, Kimberly Nolen, Sayon Dutta, Deborah R. Levy, Amy Price, Paul J. Barr, Jonathan D. Hron, Baihan Lin, Gyana Srivastava, Nuria Pastor, Unai Sánchez Luque, Tien Thi Thuy Bui, Reva Singh, Tayler Williams, Mark G. Weiner, Tristan Naumann, Dean F. Sittig, Gretchen Purcell Jackson, Yuri Quintana
J. Am. Medical Informatics Assoc.6
2022 Defining AMIA's artificial intelligence principles
abstract
Recent advances in the science and technology of artificial intelligence (AI) and growing numbers of deployed AI systems in healthcare and other services have called attention to the need for ethical principles and governance. We define and provide a rationale for principles that should guide the commission, creation, implementation, maintenance, and retirement of AI systems as a foundation for governance throughout the lifecycle. Some principles are derived from the familiar requirements of practice and research in medicine and healthcare: beneficence, nonmaleficence, autonomy, and justice come first. A set of principles follow from the creation and engineering of AI systems: explainability of the technology in plain terms; interpretability, that is, plausible reasoning for decisions; fairness and absence of bias; dependability, including "safe failure"; provision of an audit trail for decisions; and active management of the knowledge base to remain up to date and sensitive to any changes in the environment. In organizational terms, the principles require benevolence-aiming to do good through the use of AI; transparency, ensuring that all assumptions and potential conflicts of interest are declared; and accountability, including active oversight of AI systems and management of any risks that may arise. Particular attention is drawn to the case of vulnerable populations, where extreme care must be exercised. Finally, the principles emphasize the need for user education at all levels of engagement with AI and for continuing research into AI and its biomedical and healthcare applications.
Tony Solomonides, Eileen Koski, Shireen M. Atabaki, Scott Weinberg, John D. McGreevey, Joseph L. Kannry, Carolyn Petersen, Christoph U. Lehmann
J. Am. Medical Informatics Assoc.2
2021 Simulating Screening for Risk of Childhood Diabetes: The Collaborative Open Outcomes tooL (COOL)
Mohamed F. Ghalwash, Eileen Koski, Riitta Veijola, Jorma Toppari, William Hagopian, Marian Rewers, Vibha Anand
AMIA2
2021 How the COVID-19 Pandemic Accelerated AI Technology Development and Adoption in Healthcare: Lessons Learned
Michal Rosen-Zvi, Eileen Koski
AMIA3
2016 Patient Generated Data: the Missing Link in Patient Centered Care?
Noémie Elhadad, Lena Mamykina, Eileen Koski
AMIA4
2004 Review Paper: Implementing Syndromic Surveillance: A Practical Guide Informed by the Early Experience
abstract
Syndromic surveillance refers to methods relying on detection of individual and population health indicators that are discernible before confirmed diagnoses are made. In particular, prior to the laboratory confirmation of an infectious disease, ill persons may exhibit behavioral patterns, symptoms, signs, or laboratory findings that can be tracked through a variety of data sources. Syndromic surveillance systems are being developed locally, regionally, and nationally. The efforts have been largely directed at facilitating the early detection of a covert bioterrorist attack, but the technology may also be useful for general public health, clinical medicine, quality improvement, patient safety, and research. This report, authored by developers and methodologists involved in the design and deployment of the first wave of syndromic surveillance systems, is intended to serve as a guide for informaticians, public health managers, and practitioners who are currently planning deployment of such systems in their regions.
Kenneth D. Mandl, J. Marc Overhage, Michael M. Wagner 0001, William B. Lober, Paola Sebastiani, Farzad Mostashari, Julie A. Pavlin, Per H. Gesteland, Tracee Treadwell, Eileen Koski, Lori Hutwagner, David L. Buckeridge, Raymond D. Aller, Shaun J. Grannis
J. Am. Medical Informatics Assoc.10
2003 The Use of Data Mining to Investigate a Possible Quality Problem with Ultrasensitive HIV Viral Load Data at a Large Reference Laboratory
Eileen Koski, Peter N. R. Heseltine, Ron M. Kagan, Ann E. Maddo, Jake Geller
AMIA1