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EDBT 2026 Demo / reviewers in the wild / expert

Sarah N. Amyotte

dblp:67/7064 · DBLP profile ↗
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1ranked-venue papers
0as first author
0since 2021 · last 2009
—ORCID · none

Domains — the database's venue-derived domains; a paper can count in several

Applied, interdisciplinary, general and emerging computing · 1

Expertise — from the expertise taxonomy: the topics of the expert's papers under the CCF categories. A weight counts papers with recency: 1 for a paper about the topic, 0.3 when the topic is its context, halved every five years.

Interdisciplinary, comprehensive, and emerging computing
1 paper
Bioinformatics and computational biology · 100%

Topics — the 4 heaviest of 5, each with the papers that count most for it

TopicWeightPapersLastEvidence papers
Bioinformatics and computational biology › sequence analysis › sequence assembly
EST assembly		 0.112009
SCARF: maximizing next-generation EST assemblies for evolutionary and population genomic analyses · Bioinform. 2009
Bioinformatics and computational biology › sequence analysis › sequence assembly
reference-guided assembly		 0.112009
SCARF: maximizing next-generation EST assemblies for evolutionary and population genomic analyses · Bioinform. 2009
Bioinformatics and computational biology › sequence analysis
sequence assembly		 0.112009
SCARF: maximizing next-generation EST assemblies for evolutionary and population genomic analyses · Bioinform. 2009
Bioinformatics and computational biology › molecular evolution › evolutionary bioinformatics
evolutionary genomics		 0.012009
SCARF: maximizing next-generation EST assemblies for evolutionary and population genomic analyses · Bioinform. 2009

Methods — techniques the papers use, named apart from their topics

de novo assembly · 0.1454 sequencing · 0.1
YearPublicationVenuePosition
2009 SCARF: maximizing next-generation EST assemblies for evolutionary and population genomic analyses
abstract
Abstract Summary: Scaffolded and Corrected Assembly of Roche 454 (SCARF) is a next-generation sequence assembly tool for evolutionary genomics that is designed especially for assembling 454 EST sequences against high-quality reference sequences from related species. The program was created to knit together 454 contigs that do not assemble during traditional de novo assembly, using a reference sequence library to orient the 454 sequences. Availability: SCARF is freely available at http://msbarker.com/software.htm, and is released under the open source GPLv3 license (http://www.opensource.org/licenses/gpl-3.0.html. Contact: [email protected] Supplementary information: Supplementary data are available at Bioinformatics online.
Michael S. Barker, Katrina M. Dlugosch, A. Chaitanya C. Reddy, Sarah N. Amyotte, Loren H. Rieseberg
 Bioinform.4