Multi-variate time-series are one of the primary data modalities involved in large classes of problems, where deep learning models represent the state-of-the-art solution. In the healthcare domain electrophysiological data, such as intracranial electroencephalography (iEEG), is used to perform a variety of tasks. However, iEEG models require that the number of channels be fixed, while iEEG setups in clinics are highly personalized and thus vary considerably from one subject to the next. To address this concern, we propose a channel-adaptive (CA) architecture that seamlessly functions on any multi-variate signal with an arbitrary number of channels. Each CA-model can be pre-trained on a large corpus of iEEG recordings from multiple heterogeneous subjects, and then finetuned to each subject using equal or lower amounts of data compared to existing state-of-the-art models, and in only 1/5 of the time. We evaluate our CA-models on a seizure detection task both on a short-term ($\sim$15 hours) and a long-term ($\sim$2600 hours) dataset. In particular, our CA-EEGWaveNet - based on EEGWaveNet - is trained on a single seizure of the tested subject, while the baseline EEGWaveNet is trained on all but one. CA-EEGWaveNet surpasses the baseline in median F1-score (0.78 vs 0.76). Similarly, CA-EEGNet - based on EEGNet - also surpasses its baseline (0.79 vs 0.74). Overall, we show that the CA architecture is a drop-in replacement for existing seizure classification models, bringing better characteristics and performance across the board.

All data modalities are not created equal, even when the signal they measure comes from the same source. In the case of the brain, two of the most important data modalities are the scalp electroencephalogram (EEG), and the intracranial electroencephalogram (iEEG). iEEG benefits from a higher signal-to-noise ratio (SNR), as it measures the electrical activity directly in the brain, while EEG is noisier and has lower spatial and temporal resolutions. Nonetheless, both EEG and iEEG are important sources of data for human neurology, from healthcare to brain–machine interfaces. They are used by human experts, supported by deep learning (DL) models, to accomplish a variety of tasks, such as seizure detection and motor imagery classification. Although the differences between EEG and iEEG are well understood by human experts, the performance of DL models across these two modalities remains under-explored. To help characterize the importance of clean data on the performance of DL models, we propose BrainCodec, a high-fidelity EEG and iEEG neural compressor. We find that training BrainCodec on iEEG and then transferring to EEG yields higher reconstruction quality than training on EEG directly. In addition, we also find that training BrainCodec on both EEG and iEEG improves fidelity when reconstructing EEG. Our work indicates that data sources with higher SNR, such as iEEG, provide better performance across the board also in the medical time-series domain. This finding is consistent with reports coming from natural language processing, where clean data sources appear to have an outsized effect on the performance of the DL model overall. BrainCodec also achieves up to a 64x compression on iEEG and EEG without a notable decrease in quality. BrainCodec markedly surpasses current state-of-the-art compression models both in final compression ratio and in reconstruction fidelity. We also evaluate the fidelity of the compressed signals objectively on a seizure detection and a motor imagery task performed by standard DL models. Here, we find that BrainCodec achieves a reconstruction fidelity high enough to ensure no performance degradation on the downstream tasks. Finally, we collect the subjective assessment of an expert neurologist, that confirms the high reconstruction quality of BrainCodec in a realistic scenario. The code is available at https://github.com/IBM/eeg-ieeg-brain-compressor.

Neural networks have shown unprecedented capabilities, rivaling human performance in many tasks. However, current neural architectures are not capable of symbolic manipulation, which is thought to be a hallmark of human intelligence. Vector-symbolic architectures (VSAs) promise to bring this ability through simple vector manipulation, highly amenable to current and emerging hardware and software stacks built for their neural counterparts. Integrating the two models into the paradigm of neuro-vector-symbolic architectures may achieve even more human-like performance. However, despite ongoing efforts, there are no clear guidelines on the deployment of VSA in deep learning-based training situations. In this work, we aim to begin providing such guidelines by offering four practical lessons we have observed through the analysis of many VSA models and implementations. We provide thorough benchmarks and results that corroborate such lessons. First, we observe that Multiply-add-permute (MAP) and Hadamard linear binding (HLB) are up to 3-4$\times$ faster than holographic reduced representations (HRR), even when the latter is equipped with optimized FFT-based convolutions. Second, we propose further speed improvements by replacing similarity search with a linear readout, with no effect on retrieval. Third, we analyze the retrieval performance of MAP, HRR and HLB in a noise-free and noisy scenario to simulate processing by a neural network, and show that they are equivalent. Finally, we implement a hierarchical multi-level composition scheme, with notable benefits to the flexibility of integration of VSAs inside existing neural architectures. Overall, we show that these four lessons lead to faster and more effective deployment of VSA.

We propose a new algorithm for detecting epileptic seizures. Our algorithm first extracts three features, namely mean amplitude, line length, and local binary patterns that are fed to an ensemble of classifiers using hyperdimensional (HD) computing. These features are embedded into prototype vectors representing ictal (during seizures) and interictal (between seizures) brain states are constructed. These vectors can be computed at different spatial scales ranging from a single electrode up to many electrodes. This flexibility allows our algorithm to identify the electrodes that discriminate best between ictal and interictal brain states. We assess our algorithm on the SWEC-ETHZ iEEG dataset that includes 99 short-time iEEG seizures recorded with 36 to 100 electrodes from 16 drug-resistant epilepsy patients. Using k-fold cross-validation and all electrodes, our algorithm surpasses state-of-the-art algorithms yielding significantly shorter latency (8.81 s vs. 11.57 s) in seizure onset detection, and higher specificity (97.31% vs. 94.84%) and accuracy (96.85% vs. 95.42%). We can further reduce the latency of our algorithm to 3.74 s by allowing a slightly higher percentage of false alarms (2% specificity loss). Using only the top 10% of the electrodes ranked by our algorithm, we still maintain superior latency, sensitivity, and specificity compared to the other algorithms with all the electrodes. We finally demonstrate the suitability of our algorithm to deployment on low-cost embedded hardware platforms, thanks to its robustness to noise/artifacts affecting the signal, its low computational complexity, and the small memory-footprint on a RISC-V microcontroller.

We propose Laelaps, an energy-efficient and fast learning algorithm with no false alarms for epileptic seizure detection from long-term intracranial electroencephalography (iEEG) signals. Laelaps uses end-to-end binary operations by exploiting symbolic dynamics and brain-inspired hyperdimensional computing. Laelaps's results surpass those yielded by state-of-the-art (SoA) methods [1], [2], [3], including deep learning, on a new very large dataset containing 116 seizures of 18 drug-resistant epilepsy patients in 2656 hours of recordings-each patient implanted with 24 to 128 iEEG electrodes. Laelaps trains 18 patient-specific models by using only 24 seizures: 12 models are trained with one seizure per patient, the others with two seizures. The trained models detect 79 out of 92 unseen seizures without any false alarms across all the patients as a big step forward in practical seizure detection. Importantly, a simple implementation of Laelaps on the Nvidia Tegra X2 embedded device achieves 1.7×-3.9× faster execution and 1.4×-2.9× lower energy consumption compared to the best result from the SoA methods. Our source code and anonymized iEEG dataset are freely available at http://ieeg-swez.ethz.ch.

Surgery is a therapeutic option for people with epilepsy whose seizures are not controlled by anti-epilepsy drugs. In pre-surgical planning, an array of data modalities, often including intra-cranial EEG, is used in an attempt to map regions of the brain thought to be crucial for the generation of seizures. These regions are then resected with the hope that the individual is rendered seizure free as a consequence. However, post-operative seizure freedom is currently sub-optimal, suggesting that the pre-surgical assessment may be improved by taking advantage of a mechanistic understanding of seizure generation in large brain networks. Herein we use mathematical models to uncover the relative contribution of regions of the brain to seizure generation and consequently which brain regions should be considered for resection. A critical advantage of this modeling approach is that the effect of different surgical strategies can be predicted and quantitatively compared in advance of surgery. Herein we seek to understand seizure generation in networks with different topologies and study how the removal of different nodes in these networks reduces the occurrence of seizures. Since this a computationally demanding problem, a first step for this aim is to facilitate tractability of this approach for large networks. To do this, we demonstrate that predictions arising from a neural mass model are preserved in a lower dimensional, canonical model that is quicker to simulate. We then use this simpler model to study the emergence of seizures in artificial networks with different topologies, and calculate which nodes should be removed to render the network seizure free. We find that for scale-free and rich-club networks there exist specific nodes that are critical for seizure generation and should therefore be removed, whereas for small-world networks the strategy should instead focus on removing sufficient brain tissue. We demonstrate the validity of our approach by analysing intra-cranial EEG recordings from a database comprising 16 patients who have undergone epilepsy surgery, revealing rich-club structures within the obtained functional networks. We show that the postsurgical outcome for these patients was better when a greater proportion of the rich club was removed, in agreement with our theoretical predictions.

Constant current injection with superimposed periodic inhibition gives rise to phase locking as well as chaotic activity in rat neocortical neurons. Here we compare the behavior of a leaky integrate-and-fire neural model with that of a biophysically realistic model of the rat neuron to determine which membrane properties influence the response to such stimuli. We find that only the biophysical model with voltage-sensitive conductances can produce chaotic behavior.