Demo Data from EDBT 2026 / reviewers in the wild / expert
Filip Logist
dblp:69/8133
· DBLP profile ↗
2ranked-venue papers
0as first author
1since 2021 · last 2025
0000-0001-8621-7531ORCID · verified
Domains — the database's venue-derived domains; a paper can count in several
Artificial intelligence and machine learning · 1Applied, interdisciplinary, general and emerging computing · 1 · 1 since 2021
Expertise — from the expertise taxonomy: the topics of the expert's papers under the CCF categories. A weight counts papers with recency: 1 for a paper about the topic, 0.3 when the topic is its context, halved every five years.
| Interdisciplinary, comprehensive, and emerging computing
1 paper |
Bioinformatics and computational biology · 100% |
Topics — the 2 heaviest of 2, each with the papers that count most for it
| Topic | Weight | Papers | Last | Evidence papers |
|---|---|---|---|---|
Bioinformatics and computational biology › systems biology › metabolic network analysis
elementary flux modes |
0.9 | 1 | 2025 | Accelerated enumeration of extreme rays through a positive-definite elementarity test · Bioinform. 2025 |
Bioinformatics and computational biology › systems biology
metabolic network analysis |
0.9 | 1 | 2025 | Accelerated enumeration of extreme rays through a positive-definite elementarity test · Bioinform. 2025 |
Methods — techniques the papers use, named apart from their topics
positive-definite elementarity test · 0.9nullspace approach · 0.9canonical basis approach · 0.9
| Year | Publication | Venue | Position |
|---|---|---|---|
| 2025 | Accelerated enumeration of extreme rays through a positive-definite elementarity testabstractMOTIVATION: Analysis of metabolic networks through extreme rays such as extreme pathways and elementary flux modes has been shown to be effective for many applications. However, due to the combinatorial explosion of candidate vectors, their enumeration is currently limited to small- and medium-scale networks (typically <200 reactions). Partial enumeration of the extreme rays is shown to be possible, but either relies on generating them one-by-one or by implementing a sampling step in the enumeration algorithms. Sampling-based enumeration can be achieved through the canonical basis approach (CBA) or the nullspace approach (NSA). Both algorithms are very efficient in medium-scale networks, but struggle with elementarity testing in sampling-based enumeration of larger networks. RESULTS: In this paper, a novel elementarity test is defined and exploited, resulting in significant speedup of the enumeration. Even though NSA is currently considered more effective, the novel elementarity test allows CBA to significantly outpace NSA. This is shown through two case studies, ranging from a medium-scale network to a genome-scale metabolic network with over 600 reactions. In this study, extreme pathways are chosen as the extreme rays, but the novel elementarity test and CBA are equally applicable to the other types. With the increasing complexity of metabolic networks in recent years, CBA with the novel elementarity test shows even more promise as its advantages grows with increased network complexity. Given this scaling aspect, CBA is now the faster method for enumerating extreme rays in genome-scale metabolic networks. AVAILABILITY AND IMPLEMENTATION: All case studies are implemented in Python. The codebase used to generate extreme pathways using the different approaches is available at https://gitlab.kuleuven.be/biotec-plus/pos-def-ep. Wannes Mores, Satyajeet S. Bhonsale, Filip Logist, Jan F. M. Van Impe |
Bioinform. | 3 |
| 2015 | An interactive decision-support system for multi-objective optimization of nonlinear dynamic processes with uncertainty
Mattia Vallerio, Jan Hufkens, Jan F. M. Van Impe, Filip Logist |
Expert Syst. Appl. | 4 |