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Taku Kudo

dblp:70/5682 · DBLP profile ↗
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18ranked-venue papers
9as first author
0since 2021 · last 2018
—ORCID · none

Domains — the database's venue-derived domains; a paper can count in several

Artificial intelligence and machine learning · 16 · 9 first-authorApplied, interdisciplinary, general and emerging computing · 2Databases, data management, data science and information retrieval · 1Graphics, computer vision, multimedia, augmented reality and games · 1

Expertise — from the expertise taxonomy: the topics of the expert's papers under the CCF categories. A weight counts papers with recency: 1 for a paper about the topic, 0.3 when the topic is its context, halved every five years.

Artificial intelligence
11 papers
Language models and text generation · 34% Information extraction and text analysis · 28% Machine translation · 16%
Databases, data mining, and information retrieval
2 papers
Information retrieval · 53% Data mining · 47%

Topics — the 29 heaviest of 30, each with the papers that count most for it

TopicWeightPapersLastEvidence papers
Natural language and speech › Machine translation
neural machine translation
0.312018
Subword Regularization: Improving Neural Network Translation Models with Multiple Subword Candidates · ACL (1) 2018
Natural language and speech › Language models and text generation › tokenization › subword tokenization
subword regularization
0.312018
Subword Regularization: Improving Neural Network Translation Models with Multiple Subword Candidates · ACL (1) 2018
Natural language and speech › Language models and text generation › tokenization
subword tokenization
0.312018
Subword Regularization: Improving Neural Network Translation Models with Multiple Subword Candidates · ACL (1) 2018
Natural language and speech › Information extraction and text analysis
syntactic parsing
0.132005
Boosting-based Parse Reranking with Subtree Features · ACL 2005
Fast Methods for Kernel-Based Text Analysis · ACL 2003
Japanese Dependency Structure Analysis Based on Support Vector Machines · EMNLP 2000
Natural language and speech › Information extraction and text analysis
bootstrapping
0.112008
Graph-based Analysis of Semantic Drift in Espresso-like Bootstrapping Algorithms · EMNLP 2008
Machine learning › Graph learning
graph analytics
0.112008
Graph-based Analysis of Semantic Drift in Espresso-like Bootstrapping Algorithms · EMNLP 2008
Natural language and speech › Information extraction and text analysis › lexical semantics
semantic drift
0.112008
Graph-based Analysis of Semantic Drift in Espresso-like Bootstrapping Algorithms · EMNLP 2008
Computer vision › Image recognition and object detection
image classification
0.112007
Weighted Substructure Mining for Image Analysis · CVPR 2007
Machine learning › Trustworthy machine learning › interpretability › explainable AI
interpretable classification
0.112007
Weighted Substructure Mining for Image Analysis · CVPR 2007
Data mining › pattern mining
itemset mining
0.112007
Weighted Substructure Mining for Image Analysis · CVPR 2007
Data mining
pattern mining
0.112007
Weighted Substructure Mining for Image Analysis · CVPR 2007
Machine learning › Graph learning
graph clustering
0.112006
Clustering graphs by weighted substructure mining · ICML 2006
Machine learning › Probabilistic and Bayesian machine learning › structured models › latent variable model › mixture model
mixture model learning
0.112006
Clustering graphs by weighted substructure mining · ICML 2006
Bioinformatics and computational biology › RNA biology › RNA analysis › RNA bioinformatics
RNA structure prediction
0.112006
Mining frequent stem patterns from unaligned RNA sequences · Bioinform. 2006
Natural language and speech › Information extraction and text analysis
morphological analysis
0.122004
Applying Conditional Random Fields to Japanese Morphological Analysis · EMNLP 2004
Revision Learning and its Application to Part-of-Speech Tagging · ACL 2002
Natural language and speech › Language models and text generation › reranking
parse reranking
0.112005
Boosting-based Parse Reranking with Subtree Features · ACL 2005
Information retrieval › web search › link analysis
HITS algorithm
0.112005
Application of kernels to link analysis · KDD 2005
Information retrieval › ranking › graph-based ranking
link-based ranking
0.112005
Application of kernels to link analysis · KDD 2005
Information retrieval
ranking
0.112005
Application of kernels to link analysis · KDD 2005
Graph algorithms and graph theory › network analysis
link analysis
0.112005
Application of kernels to link analysis · KDD 2005
Machine learning › Graph learning
graph classification
0.012004
An Application of Boosting to Graph Classification · NIPS 2004
Machine learning › Graph learning
graph kernel
0.012004
An Application of Boosting to Graph Classification · NIPS 2004
Natural language and speech › Information extraction and text analysis
text classification
0.012004
A Boosting Algorithm for Classification of Semi-Structured Text · EMNLP 2004
Natural language and speech › Information extraction and text analysis › sequence labeling
base noun phrase chunking
0.012003
Fast Methods for Kernel-Based Text Analysis · ACL 2003
Natural language and speech › Information extraction and text analysis › syntactic parsing
dependency parsing
0.012003
Fast Methods for Kernel-Based Text Analysis · ACL 2003
Natural language and speech › Information extraction and text analysis › sequence labeling
part-of-speech tagging
0.012002
Revision Learning and its Application to Part-of-Speech Tagging · ACL 2002
Natural language and speech › Information extraction and text analysis › syntactic parsing › dependency parsing
japanese dependency parsing
0.012000
Japanese Dependency Structure Analysis Based on Support Vector Machines · EMNLP 2000
Data mining
outlier rejection
0.012007
Weighted Substructure Mining for Image Analysis · CVPR 2007
Information retrieval › retrieval models
ranked retrieval
0.012007
Weighted Substructure Mining for Image Analysis · CVPR 2007

Methods — techniques the papers use, named apart from their topics

unigram language model · 0.3probabilistic sampling · 0.3boosting · 0.3support vector machine · 0.3graph mining · 0.2bag-of-words · 0.1neumann kernels · 0.1graph laplacian kernel · 0.1diffusion kernels · 0.1graph-based analysis · 0.1l1 regularization · 0.1directed labeled graph representation · 0.1EM algorithm · 0.1DFS code tree · 0.1
YearPublicationVenuePosition
2018 Subword Regularization: Improving Neural Network Translation Models with Multiple Subword Candidates
abstract
Subword units are an effective way to alleviate the open vocabulary problems in neural machine translation (NMT).While sentences are usually converted into unique subword sequences, subword segmentation is potentially ambiguous and multiple segmentations are possible even with the same vocabulary.The question addressed in this paper is whether it is possible to harness the segmentation ambiguity as a noise to improve the robustness of NMT.We present a simple regularization method, subword regularization, which trains the model with multiple subword segmentations probabilistically sampled during training.In addition, for better subword sampling, we propose a new subword segmentation algorithm based on a unigram language model.We experiment with multiple corpora and report consistent improvements especially on low resource and out-of-domain settings.
Taku Kudo
ACL (1)1
2016 Phrase-based Machine Translation using Multiple Preordering Candidates
abstract
In this paper, we propose a new decoding method for phrase-based statistical machine translation which directly uses multiple preordering candidates as a graph structure. Compared with previous phrase-based decoding methods, our method is based on a simple left-to-right dynamic programming in which no decoding-time reordering is performed. As a result, its runtime is very fast and implementing the algorithm becomes easy. Our system does not depend on specific preordering methods as long as they output multiple preordering candidates, and it is trivial to employ existing preordering methods into our system. In our experiments for translating diverse 11 languages into English, the proposed method outperforms conventional phrase-based decoder in terms of translation qualities under comparable or faster decoding time.
Yusuke Oda, Taku Kudo, Tetsuji Nakagawa, Taro Watanabe
COLING2
2009 gBoost: a mathematical programming approach to graph classification and regression
abstract
Graph mining methods enumerate frequently appearing subgraph patterns, which can be used as features for subsequent classification or regression. However, frequent patterns are not necessarily informative for the given learning problem. We propose a mathematical programming boosting method (gBoost) that progressively collects informative patterns. Compared to AdaBoost, gBoost can build the prediction rule with fewer iterations. To apply the boosting method to graph data, a branch-and-bound pattern search algorithm is developed based on the DFS code tree. The constructed search space is reused in later iterations to minimize the computation time. Our method can learn more efficiently than the simpler method based on frequent substructure mining, because the output labels are used as an extra information source for pruning the search space. Furthermore, by engineering the mathematical program, a wide range of machine learning problems can be solved without modifying the pattern search algorithm.
Hiroto Saigo, Sebastian Nowozin, Tadashi Kadowaki, Taku Kudo, Koji Tsuda
Mach. Learn.4
2008 Graph-based Analysis of Semantic Drift in Espresso-like Bootstrapping Algorithms
Mamoru Komachi, Taku Kudo, Masashi Shimbo, Yuji Matsumoto 0001
EMNLP2
2007 Weighted Substructure Mining for Image Analysis
abstract
In Web-related applications of image categorization, it is desirable to derive an interpretable classification rule with high accuracy. Using the bag-of-words representation and the linear support vector machine, one can partly fulfill the goal, but the accuracy of linear classifiers is not high and the obtained features are not informative for users. We propose to combine item set mining and large margin classifiers to select features from the power set of all visual words. Our resulting classification rule is easier to browse and simpler to understand, because each feature has richer information. As a next step, each image is represented as a graph where nodes correspond to local image features and edges encode geometric relations between features. Combining graph mining and boosting, we can obtain a classification rule based on subgraph features that contain more information than the set features. We evaluate our algorithm in a web-retrieval ranking task where the goal is to reject outliers from a set of images returned for a keyword query. Furthermore, it is evaluated on the supervised classification tasks with the challenging VOC2005 data set. Our approach yields excellent accuracy in the unsupervised ranking task compared to a recently proposed probabilistic model and competitive results in the supervised classification task.
Sebastian Nowozin, Koji Tsuda, Takeaki Uno, Taku Kudo, Gökhan H. Bakir
CVPR4
2006 Clustering graphs by weighted substructure mining
abstract
Graph data is getting increasingly popular in, e.g., bioinformatics and text processing. A main difficulty of graph data processing lies in the intrinsic high dimensionality of graphs, namely, when a graph is represented as a binary feature vector of indicators of all possible subgraphs, the dimensionality gets too large for usual statistical methods. We propose an efficient method for learning a binomial mixture model in this feature space. Combining the l1 regularizer and the data structure called DFS code tree, the MAP estimate of non-zero parameters are computed efficiently by means of the EM algorithm. Our method is applied to the clustering of RNA graphs, and is compared favorably with graph kernels and the spectral graph distance.
Koji Tsuda, Taku Kudo
ICML2
2006 Mining frequent stem patterns from unaligned RNA sequences
abstract
Abstract Motivation: In detection of non-coding RNAs, it is often necessary to identify the secondary structure motifs from a set of putative RNA sequences. Most of the existing algorithms aim to provide the best motif or few good motifs, but biologists often need to inspect all the possible motifs thoroughly. Results: Our method RNAmine employs a graph theoretic representation of RNA sequences and detects all the possible motifs exhaustively using a graph mining algorithm. The motif detection problem boils down to finding frequently appearing patterns in a set of directed and labeled graphs. In the tasks of common secondary structure prediction and local motif detection from long sequences, our method performed favorably both in accuracy and in efficiency with the state-of-the-art methods such as CMFinder. Availability: The software is available upon request. Contact: [email protected] Supplementary information: Visit the following URL for Supplementary information, software availability and the information about the web server:
Michiaki Hamada, Koji Tsuda, Taku Kudo, Taishin Kin, Kiyoshi Asai
Bioinform.3
2005 Boosting-based Parse Reranking with Subtree Features
abstract
This paper introduces a new application of boosting for parse reranking.Several parsers have been proposed that utilize the all-subtrees representation (e.g., tree kernel and data oriented parsing).This paper argues that such an all-subtrees representation is extremely redundant and a comparable accuracy can be achieved using just a small set of subtrees.We show how the boosting algorithm can be applied to the all-subtrees representation and how it selects a small and relevant feature set efficiently.Two experiments on parse reranking show that our method achieves comparable or even better performance than kernel methods and also improves the testing efficiency.
Taku Kudo, Jun Suzuki 0001, Hideki Isozaki
ACL1
2005 Application of kernels to link analysis
abstract
The application of kernel methods to link analysis is explored. In particular, Kandola et al.'s Neumann kernels are shown to subsume not only the co-citation and bibliographic coupling relatedness but also Kleinberg's HITS importance. These popular measures of relatedness and importance correspond to the Neumann kernels at the extremes of their parameter range, and hence these kernels can be interpreted as defining a spectrum of link analysis measures intermediate between co-citation/bibliographic coupling and HITS. We also show that the kernels based on the graph Laplacian, including the regularized Laplacian and diffusion kernels, provide relatedness measures that overcome some limitations of co-citation relatedness. The property of these kernel-based link analysis measures is examined with a network of bibliographic citations. Practical issues in applying these methods to real data are discussed, and possible solutions are proposed.
Takahiko Ito, Masashi Shimbo, Taku Kudo, Yuji Matsumoto 0001
KDD3
2004 A Boosting Algorithm for Classification of Semi-Structured Text
Taku Kudo, Yuji Matsumoto 0001
EMNLP1
2004 Applying Conditional Random Fields to Japanese Morphological Analysis
Taku Kudo, Kaoru Yamamoto, Yuji Matsumoto 0001
EMNLP1
2004 An Application of Boosting to Graph Classification
abstract
This paper presents an application of Boosting for classifying labeled graphs, general structures for modeling a number of real-world data, such as chemical compounds, natural language texts, and bio sequences. The proposal consists of i) decision stumps that use subgraph as features, and ii) a Boosting algorithm in which subgraph-based decision stumps are used as weak learners. We also discuss the relation between our al- gorithm and SVMs with convolution kernels. Two experiments using natural language data and chemical compounds show that our method achieves comparable or even better performance than SVMs with convo- lution kernels as well as improves the testing efficiency. 1 Introduction Most machine learning (ML) algorithms assume that given instances are represented in numerical vectors. However, much real-world data is not represented as numerical vectors, but as more complicated structures, such as sequences, trees, or graphs. Examples include biological sequences (e.g., DNA and RNA), chemical compounds, natural language texts, and semi-structured data (e.g., XML and HTML documents). Kernel methods, such as support vector machines (SVMs) [11], provide an elegant solution to handling such structured data. In this approach, instances are implicitly mapped into a high-dimensional space, where information about their similarities (inner-products) is only used for constructing a hyperplane for classification. Recently, a number of kernels have been proposed for such structured data, such as sequences [7], trees [2, 5], and graphs [6]. Most are based on the idea that a feature vector is implicitly composed of the counts of substructures (e.g., subsequences, subtrees, subpaths, or subgraphs). Although kernel methods show remarkable performance, their implicit definitions of fea- ture space make it difficult to know what kind of features (substructures) are relevant or which features are used in classifications. To use ML algorithms for data mining or as knowledge discovery tools, they must output a list of relevant features (substructures). This information may be useful not only for a detailed analysis of individual data but for the hu- man decision-making process. In this paper, we present a new machine learning algorithm for classifying labeled graphs that has the following characteristics: 1) It performs learning and classification using the Figure 1: Labeled connected graphs and subgraph relation structural information of a given graph. 2) It uses a set of all subgraphs (bag-of-subgraphs) as a feature set without any constraints, which is essentially the same idea as a convolution kernel [4]. 3) Even though the size of the candidate feature set becomes quite large, it automatically selects a compact and relevant feature set based on Boosting. 2 Classifier for Graphs We first assume that an instance is represented in a labeled graph. The focused problem can be formalized as a general problem called the graph classification problem. The graph classification problem is to induce a mapping f (x) : X {1}, from given training examples T = { xi, yi }L i=1, where xi X is a labeled graph and yi {1} is a class label associated with the training data. We here focus on the problem of binary classifica- tion. The important characteristic is that input example xi is represented not as a numerical feature vector but as a labeled graph. 2.1 Preliminaries In this paper we focus on undirected, labeled, and connected graphs, since we can easily extend our algorithm to directed or unlabeled graphs with minor modifications. Let us in- troduce a labeled connected graph (or simply a labeled graph), its definitions and notations. Definition 1 Labeled Connected Graph A labeled graph is represented in a 4-tuple G = (V, E, L, l), where V is a set of vertices, E V V is a set of edges, L is a set of labels, and l : V E L is a mapping that assigns labels to the vertices and the edges. A labeled connected graph is a labeled graph such that there is a path between any pair of verticies. Definition 2 Subgraph Let G = (V , E , L , l ) and G = (V, E, L, l) be labeled connected graphs. G matches G, or G is a subgraph of G (G G) if the following conditions are satisfied: (1) V V , (2) E E, (3) L L, and (4) l = l. If G is a subgraph of G, then G is a supergraph of G . Figure 1 shows an example of a labeled graph and its subgraph and non-subgraph. 2.2 Decision Stumps Decision stumps are simple classifiers in which the final decision is made by a single hy- pothesis or feature. Boostexter [10] uses word-based decision stumps for text classification. To classify graphs, we define the subgraph-based decision stumps as follows. Definition 3 Decision Stumps for Graphs Let t and x be labeled graphs and y be a class label (y {1}). A decision stump classifier for graphs is given by y t x h t,y (x) def = -y otherwise. The parameter for classification is a tuple t, y , hereafter referred to as a rule of decision stumps. The decision stumps are trained to find a rule ^ t, ^ y that minimizes the error rate for the given training data T = { xi, yi }L i=1: L L ^ 1 1 t, ^ y = argmin I(yi = h t,y (xi)) = argmin (1 - yih t,y (xi)), (1) tF ,y{1} L tF ,y{1} 2L i=1 i=1 where F is a set of candidate graphs or a feature set (i.e., F = L {t|t x i=1 i}) and I () is the indicator function. The gain function for a rule t, y is defined as L gain( t, y ) def = yih t,y (xi). (2) i=1 Using the gain, the search problem (1) becomes equivalent to the problem: ^ t, ^ y = argmaxtF,y{1} gain( t, y ). In this paper, we use gain instead of error rate for clarity. 2.3 Applying Boosting The decision stump classifiers are too inaccurate to be applied to real applications, since the final decision relies on the existence of a single graph. However, accuracies can be boosted by the Boosting algorithm [3, 10]. Boosting repeatedly calls a given weak learner and finally produces a hypothesis f , which is a linear combination of K hypotheses produced by the weak learners, i,e.: f (x) = sgn( K (x)). A weak learner is built k=1 k h tk,yk at each iteration k with different distributions or weights d(k) = (d(k), . . . , d(k)) on the i L training data, where L d(k) = 1, d(k) 0. The weights are calculated to concentrate i=1 i i more on hard examples than easy examples. To use decision stumps as the weak learner of Boosting, we redefine the gain function (2) as: L gain( t, y ) def = yidih t,y (xi). (3) i=1 In this paper, we use the AdaBoost algorithm, the original and the best known algorithm among many variants of Boosting. However, it is trivial to fit our decision stumps to other boosting algorithms, such as Arc-GV [1] and Boosting with soft margins [8]. 3 Efficient Computation In this section, we introduce an efficient and practical algorithm to find the optimal rule ^ t, ^ y from given training data. This problem is formally defined as follows. Problem 1 Find Optimal Rule Let T = { x1, y1, d1 , . . . , xL, yL, dL } be training data where xi is a labeled graph, yi {1} is a class label associated with xi and di ( L d i=1 i = 1, di 0) is a normal- ized weight assigned to xi. Given T , find the optimal rule ^ t, ^ y that maximizes the gain, i.e., ^ t, ^ y = argmax {t|t x tF ,y{1} diyih t,y , where F = L i=1 i}. The most naive and exhaustive method in which we first enumerate all subgraphs F and then calculate the gains for all subgraphs is usually impractical, since the number of sub- graphs is exponential to its size. We thus adopt an alternative strategy to avoid such ex- haustive enumerations. The method to find the optimal rule is modeled as a variant of branch-and-bound algorithm and will be summarized as the following strategies: 1) Define Figure 2: Example of DFS Code Tree for a graph a canonical search space in which a whole set of subgraphs can be enumerated. 2) Find the optimal rule by traversing this search space. 3) Prune the search space by proposing a criteria for the upper bound of the gain. We will describe these steps more precisely in the next subsections. 3.1 Efficient Enumeration of Graphs Yan et al. proposed an efficient depth-first search algorithm to enumerate all subgraphs from a given graph [12]. The key idea of their algorithm is a DFS (depth first search) code, a lexicographic order to the sequence of edges. The search tree given by the DFS code is called a DFS Code Tree. Leaving the details to [12], the order of the DFS code is defined by the lexicographic order of labels as well as the topology of graphs. Figure 2 illustrates an example of a DFS Code Tree. Each node in this tree is represented in a 5-tuple [i, j, vi, eij, vj], where eij, vi and vj are the labels of i-j edge, i-th vertex, and j-th vertex respectively. By performing a pre-order search of the DFS Code Tree, we can obtain all the subgraphs of a graph in order of their DFS code. However, one cannot avoid isomorphic enumerations even giving pre-order traverse, since one graph can have several DFS codes in a DFS Code Tree. So, canonical DFS code (minimum DFS code) is defined as its first code in the pre-order search of the DFS Code Tree. Yan et al. show that two graphs G and G are isomorphic if and only if minimum DFS codes for the two graphs min(G) and min(G ) are the same. We can thus ignore non-minimum DFS codes in subgraph enumerations. In other words, in depth-first traverse, we can prune a node with DFS code c, if c is not minimum. The isomorphic graph represented in minimum code has already been enumerated in the depth-first traverse. For example, in Figure 2, if G1 is identical to G0, G0 has been discovered before the node for G1 is reached. This property allows us to avoid an explicit isomorphic test of the two graphs. 3.2 Upper bound of gain DFS Code Tree defines a canonical search space in which one can enumerate all subgraphs from a given set of graphs. We consider an upper bound of the gain that allows pruning of subspace in this canonical search space. The following lemma gives a convenient method of computing a tight upper bound on gain( t , y ) for any supergraph t of t. Lemma 1 Upper bound of the gain: (t) For any t t and y {1}, the gain of t , y is bounded by (t) (i.e., gain( t y ) (t)), where (t) is given by L L def (t) = max 2 di - yi di, 2 di + yi di . {i|yi=+1,txi} i=1 {i|yi=-1,txi} i=1 Proof 1 L L gain( t , y ) = diyih t ,y (xi) = diyi y (2I(t xi) - 1), i=1 i=1 where I() is the indicator function. If we focus on the case y = +1, then L L gain( t , +1 ) = 2 yidi - yi di 2 di - yi di {i|t xi} i=1 {i|yi=+1,t xi} i=1 L 2 di - yi di, {i|yi=+1,txi} i=1 since |{i|yi = +1, t xi}| |{i|yi = +1, t xi}| for any t t. Similarly, L gain( t , -1 ) 2 di + yi di. {i|yi=-1,txi} i=1 Thus, for any t t and y {1}, gain( t , y ) (t). 2 We can efficiently prune the DFS Code Tree using the upper bound of gain u(t). During pre-order traverse in a DFS Code Tree, we always maintain the temporally suboptimal gain among all the gains calculated previously. If (t) < , the gain of any supergraph t t is no greater than , and therefore we can safely prune the search space spanned from the subgraph t. If (t) , then we cannot prune this space since a supergraph t t might exist such that gain(t ) . 3.3 Efficient Computation in Boosting At each Boosting iteration, the suboptimal value is reset to 0. However, if we can calcu- late a tighter upper bound in advance, the search space can be pruned more effectively. For this purpose, a cache is used to maintain all rules found in the previous iterations. Subop- timal value is calculated by selecting one rule from the cache that maximizes the gain of the current distribution. This idea is based on our observation that a rule in the cache tends to be reused as the number of Boosting iterations increases. Furthermore, we also maintain the search space built by a DFS Code Tree as long as memory allows. This cache reduces duplicated constructions of a DFS Code Tree at each Boosting iteration. 4 Connection to Convolution Kernel Recent studies [1, 9, 8] have shown that both Boosting and SVMs [11] work according to similar strategies: constructing an optimal hypothesis that maximizes the smallest margin between positive and negative examples. The difference between the two algorithms is the metric of margin; the margin of Boosting is measured in l1-norm, while that of SVMs is measured in l2-norm. We describe how maximum margin properties are translated in the two algorithms. AdaBoost and Arc-GV asymptotically solve the following linear program, [1, 9, 8], J max ; s.t. yi wjhj(xi) , ||w||1 = 1 (4) wIRJ ,IR+ j=1 where J is the number of hypotheses. Note that in the case of decision stumps for graphs, J = |{1} F | = 2|F |. SVMs, on the other hand, solve the following quadratic optimization problem [11]: 1 max ; s.t. yi (w (xi)) , ||w||2 = 1. (5) wIRJ ,IR+ 1For simplicity, we omit the bias term (b) and the extension of Soft Margin. The function (x) maps the original input example x into a J -dimensional feature vector (i.e., (x) IRJ ). The l2-norm margin gives the separating hyperplane expressed by dot- products in feature space. The feature space in SVMs is thus expressed implicitly by using a Marcer kernel function, which is a generalized dot-product between two objects, (i.e., K(x1, x2) = (x1) (x2)). The best known kernel for modeling structured data is a convolution kernel [4] (e.g., string kernel [7] and tree kernel [2, 5]), which argues that a feature vector is implicitly composed of the counts of substructures. 2 The implicit mapping defined by the convolution kernel is given as: (x) = (#(t1 x), . . . , #(t|F| x)), where tj F and #(u) is the cardinality of u. Noticing that a decision stump can be expressed as h t,y (x) = y (2I(t x) - 1), we see that the constraints or feature space of Boosting with substructure-based decision stumps are essentially the same as those of SVMs with the convolution kernel 3. The critical difference is the definition of margin: Boosting uses l1-norm, and SVMs use l2-norm. The difference between them can be explained by sparseness. It is well known that the solution or separating hyperplane of SVMs is expressed in a linear combination of training examples using coefficients , (i.e., w = L i=1 i(xi)) [11]. Maximizing l2-norm margin gives a sparse solution in the example space, (i.e., most of i becomes 0). Examples having non-zero coefficients are called support vectors that form the final solution. Boosting, in contrast, performs the computation explicitly in feature space. The concept behind Boosting is that only a few hypotheses are needed to express the final solution. l1-norm margin realizes such a property [8]. Boosting thus finds a sparse solution in the feature space. The accuracies of these two methods depend on the given training data. However, we argue that Boosting has the following practical advantages. First, sparse hypotheses allow the construction of an efficient classification algorithm. The complexity of SVMs with tree kernel is O(l|n1||n2|), where n1 and n2 are trees, and l is the number of support vectors, which is too heavy to be applied to real applications. Boosting, in contrast, performs faster since the complexity depends only on a small number of decision stumps. Second, sparse hypotheses are useful in practice as they provide "transparent" models with which we can analyze how the model performs or what kind of features are useful. It is difficult to give such analysis with kernel methods since they define feature space implicitly. 5 Experiments and Discussion To evaluate our algorithm, we employed two experiments using two real-world data. (1) Cellphone review classification (REV) The goal of this task is to classify reviews for cellphones as positive or negative. 5,741 sen- tences were collected from an Web-BBS discussion about cellphones in which users were directed to submit positive reviews separately from negative reviews. Each sentence is rep- resented in a word-based dependency tree using a Japanese dependency parser CaboCha4. (2) Toxicology prediction of chemical compounds (PTC) The task is to classify chemical compounds by carcinogenicity. We used the PTC data set5 consisting of 417 compounds with 4 types of test animals: male mouse (MM), female 2Strictly speaking, graph kernel [6] is not a convolution kernel because it is not based on the count of subgraphs, but on random walks in a graph. 3The difference between decision stumps and the convolution kernels is that the former uses a binary feature denoting the existence (or absence) of each substructure, whereas the latter uses the cardinality of each substructure. However, it makes little difference since a given graph is often sparse and the cardinality of substructures will be approximated by their existence. 4http://chasen.naist.jp/~ taku/software/cabocha/ 5http://www.predictive-toxicology.org/ptc/ Table 1: Classification F-scores of the REV and PTC tasks REV PTC MM FM MR FR Boosting BOL-based Decision Stumps 76.6 47.0 52.9 42.7 26.9 Subgraph-based Decision Stumps 79.0 48.9 52.5 55.1 48.5 SVMs BOL Kernel 77.2 40.9 39.9 43.9 21.8 Tree/Graph Kernel 79.4 42.3 34.1 53.2 25.9 mouse (FM), male rat (MR) and female rat (FR). Each compound is assigned one of the following labels: {EE,IS,E,CE,SE,P,NE,N}. We here assume that CE,SE, and P are "posi- tive" and that NE and NN are "negative", which is exactly the same setting as [6]. We thus have four binary classifiers (MM/FM/MR/FR) in this data set. We compared the performance of our Boosting algorithm and support vector machines with tree kernel [2, 5] (for REV) and graph kernel [6] (for PTC) according to their F-score in 5-fold cross validation. Table 1 summarizes the best results of REV and PCT task, varying the hyperparameters of Boosting and SVMs (e.g., maximum iteration of Boosting, soft margin parameter of SVMs, and termination probability of random walks in graph kernel [6]). We also show the results with bag-of-label (BOL) features as a baseline. In most tasks and categories, ML algorithms with structural features outperform the baseline systems (BOL). These re- sults support our first intuition that structural features are important for the classification of structured data, such as natural language texts and chemical compounds. Comparing our Boosting algorithm with SVMs using tree kernel, no significant difference can be found the REV data set. However, in the PTC task, our method outperforms SVMs using graph kernel on the categories MM, FM, and FR at a statistically significant level. Furthermore, the number of active features (subgraphs) used in Boosting is much smaller than those of SVMs. With our methods, about 1800 and 50 features (subgraphs) are used in the REV and PTC tasks respectively, while the potential number of features is quite large. Even giving all subgraphs as feature candidates, Boosting selects a small and highly relevant subset of features. Figure 3 show an example of extracted support features (subgraphs) in the REV and PTC task respectively. In the REV task, features reflecting the domain knowledge (cellphone reviews) are extracted: 1) "want to use " positive, 2) "hard to use" negative, 3) "recharging time is short" positive, 4) "recharging time is long" negative. These features are interesting because we cannot determine the correct label (positive/negative) only using such bag-of-label features as "charging," "short," or "long." In the PTC task, similar structures show different behavior. For instance, Trihalomethanes (TTHMs), well- known carcinogenic substances (e.g., chloroform, bromodichloromethane, and chlorodi- bromomethane), contain the common substructure H-C-Cl (Fig. 3(a)). However, TTHMs do not contain the similar but different structure H-C(C)-Cl (Fig. 3(b)). Such structural information is useful for analyzing how the system classifies the input data in a category and what kind of features are used in the classification. We cannot examine such analysis in kernel methods, since they define their feature space implicitly. The reason why graph kernel shows poor performance on the PTC data set is that it cannot identify subtle difference between two graphs because it is based on a random walks in a graph. For example, kernel dot-product between the similar but different structures 3(c) and 3(d) becomes quite large, although they show different behavior. To classify chemical compounds by their functions, the system must be capable of capturing subtle differences among given graphs. The testing speed of our Boosting algorithm is also much faster than SVMs with tree/graph Figure 3: Support features and their weights kernels. In the REV task, the speed of Boosting and SVMs are 0.135 sec./1,149 instances and 57.91 sec./1,149 instances respectively6. Our method is significantly faster than SVMs with tree/graph kernels without a discernible loss of accuracy.
Taku Kudo, Eisaku Maeda, Yuji Matsumoto 0001
NIPS1
2004 Use of morphological analysis in protein name recognition
Kaoru Yamamoto, Taku Kudo, Akihiko Konagaya, Yuji Matsumoto 0001
J. Biomed. Informatics2
2003 Fast Methods for Kernel-Based Text Analysis
abstract
Kernel-based learning (e.g., Support Vector Machines) has been successfully applied to many hard problems in Natural Language Processing (NLP). In NLP, although feature combinations are crucial to improving performance, they are heuristically selected. Kernel methods change this situation. The merit of the kernel methods is that effective feature combination is implicitly expanded without loss of generality and increasing the computational costs. Kernel-based text analysis shows an excellent performance in terms in accuracy; however, these methods are usually too slow to apply to large-scale text analysis. In this paper, we extend a Basket Mining algorithm to convert a kernel-based classifier into a simple and fast linear classifier. Experimental results on English BaseNP Chunking, Japanese Word Segmentation and Japanese Dependency Parsing show that our new classifiers are about 30 to 300 times faster than the standard kernel-based classifiers.
Taku Kudo, Yuji Matsumoto 0001
ACL1
2002 Revision Learning and its Application to Part-of-Speech Tagging
abstract
This paper presents a revision learning method that achieves high performance with small computational cost by combining a model with high generalization capacity and a model with small computational cost. This method uses a high capacity model to revise the output of a small cost model. We apply this method to English part-of-speech tagging and Japanese morphological analysis, and show that the method performs well.
Tetsuji Nakagawa, Taku Kudo, Yuji Matsumoto 0001
ACL2
2002 Japanese Dependency Analysis using Cascaded Chunking
Taku Kudo, Yuji Matsumoto 0001
CoNLL1
2001 Chunking with Support Vector Machines
Taku Kudo, Yuji Matsumoto 0001
NAACL1
2000 Japanese Dependency Structure Analysis Based on Support Vector Machines
abstract
This paper presents a method of Japanese dependency structure analysis based on Sup-port Vector Machines (SVMs).Conventional parsing techniques based on Machine Learning framework, such as Decision Trees and Maximum Entropy Models, have difficulty in selecting useful features as well as finding appropriate combination of selected features.On the other hand, it is well-known that SVMs achieve high generalization performance even with input data of very high dimensional feature space.Furthermore, by introducing the Kernel principle, SVMs can carry out the training in high-dimensional • spaces with a smaller computational cost independent of their dimensionality.We apply SVMs to Japanese dependency structure identification problem.Experimental results on Kyoto University corpus show that our system achieves the accuracy of 89.09% even with small training data (7958 sentences).
Taku Kudo, Yuji Matsumoto 0001
EMNLP1