Demo Data from EDBT 2026 / reviewers in the wild / expert
Banu Dost
dblp:71/4333
· DBLP profile ↗
4ranked-venue papers
4as first author
0since 2021 · last 2011
—ORCID · none
Domains — the database's venue-derived domains; a paper can count in several
Applied, interdisciplinary, general and emerging computing · 4 · 4 first-author
Expertise — from the expertise taxonomy: the topics of the expert's papers under the CCF categories. A weight counts papers with recency: 1 for a paper about the topic, 0.3 when the topic is its context, halved every five years.
| Interdisciplinary, comprehensive, and emerging computing
3 papers |
Bioinformatics and computational biology · 100% | |
| Theoretical computer science
1 paper |
Algorithms and data structures · 100% |
Topics — the 8 heaviest of 10, each with the papers that count most for it
| Topic | Weight | Papers | Last | Evidence papers |
|---|---|---|---|---|
Bioinformatics and computational biology › proteomics
mass spectrometry data analysis |
0.1 | 1 | 2009 | Shared Peptides in Mass Spectrometry Based Protein Quantification · RECOMB 2009 |
Bioinformatics and computational biology › proteomics
protein quantification |
0.1 | 1 | 2009 | Shared Peptides in Mass Spectrometry Based Protein Quantification · RECOMB 2009 |
Bioinformatics and computational biology
proteomics |
0.1 | 1 | 2009 | Shared Peptides in Mass Spectrometry Based Protein Quantification · RECOMB 2009 |
Bioinformatics and computational biology › network bioinformatics › biological network analysis › subnetwork detection
network querying |
0.1 | 1 | 2007 | QNet: A Tool for Querying Protein Interaction Networks · RECOMB 2007 |
Bioinformatics and computational biology › protein analysis › protein-protein interaction
protein-protein interaction network |
0.1 | 1 | 2007 | QNet: A Tool for Querying Protein Interaction Networks · RECOMB 2007 |
Bioinformatics and computational biology › genomics
computational genomics |
0.1 | 1 | 2006 | Structural Alignment of Pseudoknotted RNA · RECOMB 2006 |
Bioinformatics and computational biology › RNA biology › RNA analysis › RNA bioinformatics
RNA structure |
0.1 | 1 | 2006 | Structural Alignment of Pseudoknotted RNA · RECOMB 2006 |
Algorithms and data structures › sequence algorithms › string algorithms
sequence alignment |
0.1 | 1 | 2006 | Structural Alignment of Pseudoknotted RNA · RECOMB 2006 |
Methods — techniques the papers use, named apart from their topics
dynamic programming · 0.1shared peptide analysis · 0.1graph matching · 0.1
| Year | Publication | Venue | Position |
|---|---|---|---|
| 2011 | TCLUST: A Fast Method for Clustering Genome-Scale Expression DataabstractGenes with a common function are often hypothesized to have correlated expression levels in mRNA expression data, motivating the development of clustering algorithms for gene expression data sets. We observe that existing approaches do not scale well for large data sets, and indeed did not converge for the data set considered here. We present a novel clustering method TCLUST that exploits coconnectedness to efficiently cluster large, sparse expression data. We compare our approach with two existing clustering methods CAST and K-means which have been previously applied to clustering of gene-expression data with good performance results. Using a number of metrics, TCLUST is shown to be superior to or at least competitive with the other methods, while being much faster. We have applied this clustering algorithm to a genome-scale gene-expression data set and used gene set enrichment analysis to discover highly significant biological clusters. (Source code for TCLUST is downloadable at http://www.cse.ucsd.edu/~bdost/tclust.) Banu Dost, Chunlei Wu, Andrew I. Su, Vineet Bafna |
IEEE ACM Trans. Comput. Biol. Bioinform. | 1 |
| 2009 | Shared Peptides in Mass Spectrometry Based Protein Quantification
Banu Dost, Nuno Bandeira, Zhouxin Shen, Steve Briggs, Vineet Bafna |
RECOMB | 1 |
| 2007 | QNet: A Tool for Querying Protein Interaction Networks
Banu Dost, Tomer Shlomi, Nitin Gupta 0002, Eytan Ruppin, Vineet Bafna, Roded Sharan |
RECOMB | 1 |
| 2006 | Structural Alignment of Pseudoknotted RNA
Banu Dost, Buhm Han, Shaojie Zhang 0001, Vineet Bafna |
RECOMB | 1 |