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Che-Yu Lee

dblp:73/7243 · DBLP profile ↗
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2ranked-venue papers
1as first author
1since 2021 · last 2024
—ORCID · unresolved

Domains — the database's venue-derived domains; a paper can count in several

Applied, interdisciplinary, general and emerging computing · 2 · 1 first-author · 1 since 2021

Expertise — from the expertise taxonomy: the topics of the expert's papers under the CCF categories. A weight counts papers with recency: 1 for a paper about the topic, 0.3 when the topic is its context, halved every five years.

Interdisciplinary, comprehensive, and emerging computing
1 paper
Bioinformatics and computational biology · 100%

Topics — the 5 heaviest of 5, each with the papers that count most for it

TopicWeightPapersLastEvidence papers
Bioinformatics and computational biology › gene expression analysis
alternative polyadenylation analysis
0.212013
Alternative polyadenylation sites reveal distinct chromatin accessibility and histone modification in human cell lines · Bioinform. 2013
Bioinformatics and computational biology
gene regulation
0.212013
Alternative polyadenylation sites reveal distinct chromatin accessibility and histone modification in human cell lines · Bioinform. 2013
Bioinformatics and computational biology › epigenomics
chromatin accessibility
0.012013
Alternative polyadenylation sites reveal distinct chromatin accessibility and histone modification in human cell lines · Bioinform. 2013
Bioinformatics and computational biology
epigenomics
0.012013
Alternative polyadenylation sites reveal distinct chromatin accessibility and histone modification in human cell lines · Bioinform. 2013
Bioinformatics and computational biology › epigenomics
histone modification analysis
0.012013
Alternative polyadenylation sites reveal distinct chromatin accessibility and histone modification in human cell lines · Bioinform. 2013

Methods — techniques the papers use, named apart from their topics

statistical analysis · 0.2ENCODE data analysis · 0.2
YearPublicationVenuePosition
2024 Fusion-Based Multiview Color Correction via Minimum Weight-First-Then-Larger Outdegree Target Image Selection
abstract
Color correction for multiview images is a fundamental yet challenging task to generate a color-consistent composite image and has important applications in remote sensing and 3-D vision. In this article, we propose an effective fusion algorithm for multiview color correction using a graph-based adaptive minimum weight-first-then-larger outdegree (AMWLO) strategy to select the next target image. Initially, the given multiview images are stitched using an existing image stitching method. First, we take a modified color distance (MCD) metric to estimate the residual of the overlapped region of each image pair as the weight of the edge. After constructing the graph model of the given multiview images, an AMWLO approach is proposed to select the first target image to be performed for color correction. Then, integrating the histogram equalization (HE) and the joint bilateral interpolation (JBI), the proposed fusion-based method is used to correct the color for the selected target image. After that, the weights between the color-corrected target image and its overlapped images are updated. The above AMWLO-based target image selection, color correction for the selected target image, and edge weight update are repeated until the color correction for all multiview images is completed. To better evaluate the quality performance of the color-corrected stitched multiview images, some modified quality assessments are proposed by taking the overlapping area factor into account. Based on large-scale testing multiview image datasets, the comprehensive experimental results demonstrated the quantitative and qualitative quality merits of our algorithm relative to the state-of-the-art methods.
Kuo-Liang Chung, Che-Yu Lee
IEEE Trans. Geosci. Remote. Sens.2
2013 Alternative polyadenylation sites reveal distinct chromatin accessibility and histone modification in human cell lines
abstract
MOTIVATION: In addition to alternative splicing, alternative polyadenylation has also been identified as a critical and prevalent regulatory mechanism in human gene expression. However, the mechanism of alternative polyadenylation selection and the involved factors is still largely unknown. RESULTS: We use the ENCODE data to scan DNA functional elements, including chromatin accessibility and histone modification, around transcript cleavage sites. Our results demonstrate that polyadenylation sites tend to be less sensitive to DNase I. However, these polyadenylation sites have preference in nucleosome-depleted regions, indicating the involvement of chromatin higher-order structure rather than nucleosomes in the resultant lower chromatin accessibility. More interestingly, for genes using two polyadenylation sites, the distal sites show even lower chromatin accessibility compared with the proximal sites or the unique sites of genes using only one polyadenylation site. We also observe that the histone modification mark, histone H3 lysine 36 tri-methylation (H3K36Me3), exhibits different patterns around the cleavage sites of genes using multiple polyadenylation sites from those of genes using a single polyadenylation site. Surprisingly, the H3K36Me3 levels are comparable among the alternative polyadenylation sites themselves. In summary, polyadenylation and alternative polyadenylation are closely related to functional elements on the DNA level. CONTACT: [email protected].
Che-Yu Lee
Bioinform.1