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Ken-ichi Nomura

dblp:75/3321 · DBLP profile ↗
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13ranked-venue papers
3as first author
1since 2021 · last 2025
—ORCID · conflict

Domains — the database's venue-derived domains; a paper can count in several

Systems, architecture and hardware · 11 · 3 first-author · 1 since 2021

Expertise — from the expertise taxonomy: the topics of the expert's papers under the CCF categories. A weight counts papers with recency: 1 for a paper about the topic, 0.3 when the topic is its context, halved every five years.

Computer architecture, parallel and distributed computing, and storage systems
3 papers
High-performance computing · 60% Hardware accelerators and domain-specific architectures · 34% Parallel and multicore computing · 6%
Interdisciplinary, comprehensive, and emerging computing
3 papers
Computational science and engineering · 100%

Topics — the 6 heaviest of 8, each with the papers that count most for it

TopicWeightPapersLastEvidence papers
High-performance computing › supercomputing
exascale computing
0.912025
Multiscale Light-Matter Dynamics in Quantum Materials: From Electrons to Topological Superlattices · SC 2025
Hardware accelerators and domain-specific architectures › machine learning accelerator
low-precision arithmetic
0.912025
Multiscale Light-Matter Dynamics in Quantum Materials: From Electrons to Topological Superlattices · SC 2025
High-performance computing
quantum mechanical simulation
0.312025
Multiscale Light-Matter Dynamics in Quantum Materials: From Electrons to Topological Superlattices · SC 2025
High-performance computing › scientific computing systems
molecular dynamics simulation
0.212013
A scalable parallel algorithm for dynamic range-limited n-tuple computation in many-body molecular dynamics simulation · SC 2013
Parallel and multicore computing
parallel algorithms
0.212013
A scalable parallel algorithm for dynamic range-limited n-tuple computation in many-body molecular dynamics simulation · SC 2013
High-performance computing
scientific computing systems
0.212013
A scalable parallel algorithm for dynamic range-limited n-tuple computation in many-body molecular dynamics simulation · SC 2013

Methods — techniques the papers use, named apart from their topics

neural-network quantum molecular dynamics · 1.7metamodel-space algebra · 1.7divide-conquer-recombine · 1.7plane-wave basis · 0.4multigrid · 0.4divide-and-conquer density functional theory · 0.4shift-collapse algorithm · 0.3computation-pattern algebraic framework · 0.3
YearPublicationVenuePosition
2025 Multiscale Light-Matter Dynamics in Quantum Materials: From Electrons to Topological Superlattices
abstract
Light-matter dynamics in topological quantum materials enables ultralow-power, ultrafast devices. A challenge is simulating multiple field and particle equations for light, electrons, and atoms over vast spatiotemporal scales on Exaflop/s computers with increased heterogeneity and low-precision focus. We present a paradigm shift that solves the multiscale/multiphysics/heterogeneity challenge harnessing hardware heterogeneity and low-precision arithmetic. Divide-conquer-recombine algorithms divide the problem into not only spatial but also physical subproblems of small dynamic ranges and minimal mutual information, which are mapped onto best-characteristics-matching hardware units, while metamodel-space algebra minimizes communication and precision requirements. Using 60,000 GPUs of Aurora, DC-MESH (divide-and-conquer Maxwell-Ehrenfest-surface hopping) and XS-NNQMD (excited-state neural-network quantum molecular dynamics) modules of MLMD (multiscale light-matter dynamics) software were 152- and 3,780-times faster than the state-of-the-art for 15.4 million-electron and 1.23 trillion-atom PbTiO3 material, achieving 1.87 EFLOP/s for the former. This enabled the first study of light-induced switching of topological superlattices for future ferroelectric ‘topotronics’.
Taufeq Mohammed Razakh, Thomas Linker, Ye Luo 0001, Nariman Piroozan, Simon J. Pennycook, Nalini Kumar, Albert Musaelian, Anders Johansson 0011, Boris Kozinsky, Rajiv K. Kalia, Priya Vashishta, Fuyuki Shimojo, Shinnosuke Hattori, Ken-ichi Nomura, Aiichiro Nakano
SC14
2020 Quantum Dynamics at Scale: Ultrafast Control of Emergent Functional Materials
abstract
Confluence of extreme-scale quantum dynamics simulations (i.e. [email protected]) and cutting-edge x-ray free-electron laser experiments are revolutionizing materials science. An archetypal example is the exciting concept of using picosecond light pulses to control emergent material properties on demand in atomically-thin layered materials. This paper describes efforts to scale our quantum molecular dynamics engine toward the United States' first exaflop/s computer, under an Aurora Early Science Program project named "Metascalable layered material genome". Key algorithmic and computing techniques incorporated are: (1) globally-scalable and locally-fast solvers within a linear-scaling divide-conquer-recombine algorithmic framework; (2) algebraic 'BLASification' of computational kernels; and (3) data alignment and loop restructuring, along with register and cache blocking, for enhanced vectorization and efficient memory access. The resulting weak-scaling parallel efficiency was 0.93 on 131,072 Intel Xeon Phi cores for a 56.6 million atom (or 169 million valence-electron) system, whereas the various code transformations achieved 5-fold speedup. The optimized simulation engine allowed us for the first time to establish a significant effect of substrate on the dynamics of layered material upon electronic excitation.
Subodh Tiwari, Aravind Krishnamoorthy, Pankaj Rajak, Putt Sakdhnagool, Manaschai Kunaseth, Fuyuki Shimojo, Shogo Fukushima, Aiichiro Nakano, Ye Luo 0001, Rajiv K. Kalia, Ken-ichi Nomura, Priya Vashishta
HPC Asia11
2018 Acceleration of Dynamic n-Tuple Computations in Many-Body Molecular Dynamics
abstract
Computation on dynamic n-tuples of particles is ubiquitous in scientific computing, with an archetypal application in many-body molecular dynamics (MD) simulations. We propose a tuple-decomposition (TD) approach that reorders computations according to dynamically created lists of n-tuples. We analyze the performance characteristics of the TD approach on general purpose graphics processing units for MD simulations involving pair (n = 2) and triplet (n = 3) interactions. The results show superior performance of the TD approach over the conventional particle-decomposition (PD) approach. Detailed analyses reveal the register footprint as the key factor that dictates the performance. Furthermore, the TD approach is found to outperform PD for more intensive computations of quadruplet (n = 4) interactions in first principles-informed reactive MD simulations based on the reactive force-field (ReaxFF) method. This work thus demonstrates the viable performance portability of the TD approach across a wide range of applications.
Patrick E. Small, Kuang Liu, Subodh Tiwari, Rajiv K. Kalia, Aiichiro Nakano, Ken-ichi Nomura, Priya Vashishta
HPC Asia6
2014 Metascalable Quantum Molecular Dynamics Simulations of Hydrogen-on-Demand
abstract
We enabled an unprecedented scale of quantum molecular dynamics simulations through algorithmic innovations. A new lean divide-and-conquer density functional theory algorithm significantly reduces the prefactor of the O(N) computational cost based on complexity and error analyses. A globally scalable and locally fast solver hybridizes a global real-space multigrid with local plane-wave bases. The resulting weak-scaling parallel efficiency was 0.984 on 786,432 IBM Blue Gene/Q cores for a 50.3 million-atom (39.8 trillion degrees-of-freedom) system. The time-to-solution was 60-times less than the previous state-of-the art, owing to enhanced strong scaling by hierarchical band-space domain decomposition and high floating-point performance (50.5% of the peak). Production simulation involving 16,661 atoms for 21,140 time steps (or 129,208 self-consistent-field iterations) revealed a novel nanostructural design for on-demand hydrogen production from water, advancing renewable energy technologies. This metascalable (or "design once, scale on new architectures") algorithm is used for broader applications within a recently proposed divide-conquer-recombine paradigm.
Ken-ichi Nomura, Rajiv K. Kalia, Aiichiro Nakano, Priya Vashishta, Kohei Shimamura, Fuyuki Shimojo, Manaschai Kunaseth, Paul Messina, Nichols A. Romero
SC1
2013 A scalable parallel algorithm for dynamic range-limited n-tuple computation in many-body molecular dynamics simulation
abstract
Recent advancements in reactive molecular dynamics (MD) simulations based on many-body interatomic potentials necessitate efficient dynamic n-tuple computation, where a set of atomic n-tuples within a given spatial range is constructed at every time step. Here, we develop a computation-pattern algebraic framework to mathematically formulate general n-tuple computation. Based on translation/reflection-invariant properties of computation patterns within this framework, we design a shift-collapse (SC) algorithm for cell-based parallel MD. Theoretical analysis quantifies the compact n-tuple search space and small communication cost of SC-MD for arbitrary n, which are reduced to those in best pair-computation approaches (e.g. eighth-shell method) for n = 2. Benchmark tests show that SC-MD outperforms our production MD code at the finest grain, with 9.7-and 5.1-fold speedups on Intel-Xeon and BlueGene/Q clusters. SC-MD also exhibits excellent strong scalability.
Manaschai Kunaseth, Rajiv K. Kalia, Aiichiro Nakano, Ken-ichi Nomura, Priya Vashishta
SC4
2012 Memory-Access Optimization of Parallel Molecular Dynamics Simulation via Dynamic Data Reordering
Manaschai Kunaseth, Ken-ichi Nomura, Hikmet Dursun, Rajiv K. Kalia, Aiichiro Nakano, Priya Vashishta
Euro-Par2
2012 Hierarchical parallelization and optimization of high-order stencil computations on multicore clusters
Hikmet Dursun, Manaschai Kunaseth, Ken-ichi Nomura, Jacqueline Chame, Robert F. Lucas, Chun Chen 0002, Mary W. Hall, Rajiv K. Kalia, Aiichiro Nakano, Priya Vashishta
J. Supercomput.3
2011 Exploiting hierarchical parallelisms for molecular dynamics simulation on multicore clusters
Liu Peng, Manaschai Kunaseth, Hikmet Dursun, Ken-ichi Nomura, Weiqiang Wang 0002, Rajiv K. Kalia, Aiichiro Nakano, Priya Vashishta
J. Supercomput.4
2009 A Multilevel Parallelization Framework for High-Order Stencil Computations
Hikmet Dursun, Ken-ichi Nomura, Liu Peng, Richard Seymour, Weiqiang Wang 0002, Rajiv K. Kalia, Aiichiro Nakano, Priya Vashishta
Euro-Par2
2009 A metascalable computing framework for large spatiotemporal-scale atomistic simulations
abstract
A metascalable (or ldquodesign once, scale on new architecturesrdquo) parallel computing framework has been developed for large spatiotemporal-scale atomistic simulations of materials based on spatiotemporal data locality principles, which is expected to scale on emerging multipetaflops architectures. The framework consists of: (1) an embedded divide-and-conquer (EDC) algorithmic framework based on spatial locality to design linear-scaling algorithms for high complexity problems; (2) a space-time-ensemble parallel (STEP) approach based on temporal locality to predict long-time dynamics, while introducing multiple parallelization axes; and (3) a tunable hierarchical cellular decomposition (HCD) parallelization framework to map these O(N) algorithms onto a multicore cluster based on hybrid implementation combining message passing and critical section-free multithreading. The EDC-STEP-HCD framework exposes maximal concurrency and data locality, thereby achieving: (1) inter-node parallel efficiency well over 0.95 for 218 billion-atom molecular-dynamics and 1.68 trillion electronic-degrees-of-freedom quantum-mechanical simulations on 212,992 IBM BlueGene/L processors (superscalability); (2) high intra-node, multithreading parallel efficiency (nanoscalability); and (3) nearly perfect time/ensemble parallel efficiency (eon-scalability). The spatiotemporal scale covered by MD simulation on a sustained petaflops computer per day (i.e. petaflopsmiddotday of computing) is estimated as NT = 2.14 (e.g. N = 2.14 million atoms for T = 1 microseconds).
Ken-ichi Nomura, Richard Seymour, Weiqiang Wang 0002, Hikmet Dursun, Rajiv K. Kalia, Aiichiro Nakano, Priya Vashishta, Fuyuki Shimojo, Lin H. Yang
IPDPS1
2009 High-order stencil computations on multicore clusters
abstract
Stencil computation (SC) is of critical importance for broad scientific and engineering applications. However, it is a challenge to optimize complex, high-order SC on emerging clusters of multicore processors. We have developed a hierarchical SC parallelization framework that combines: (1) spatial decomposition based on message passing; (2) multithreading using critical section-free, dual representation; and (3) single-instruction multiple-data (SIMD) parallelism based on various code transformations. Our SIMD transformations include translocated statement fusion, vector composition via shuffle, and vectorized data layout reordering (e.g. matrix transpose), which are combined with traditional optimization techniques such as loop unrolling. We have thereby implemented two SCs of different characteristics-diagonally dominant, lattice Boltzmann method (LBM) for fluid flow simulation and highly off-diagonal (6-th order) finite-difference time-domain (FDTD) code for seismic wave propagation-on a Cell Broadband Engine (Cell BE) based system (a cluster of PlayStation3 consoles), a dual Intel quadcore platform, and IBM BlueGene/L and P. We have achieved high inter-node and intra-node (multithreading and SIMD) scalability for the diagonally dominant LBM: Weak-scaling parallel efficiency 0.978 on 131,072 BlueGene/P processors; strong-scaling multithreading efficiency 0.882 on 6 cores of Cell BE; and strong-scaling SIMD efficiency 0.780 using 4-element vector registers of Cell BE. Implementation of the high-order SC, on the contrary, is less efficient due to long-stride memory access and the limited size of the vector register file, which points out the need for further optimizations.
Liu Peng, Richard Seymour, Ken-ichi Nomura, Rajiv K. Kalia, Aiichiro Nakano, Priya Vashishta, Alexander Loddoch, Michael Netzband, William R. Volz, Chap C. Wong
IPDPS3
2008 Parallel Lattice Boltzmann Flow Simulation on Emerging Multi-core Platforms
Liu Peng, Ken-ichi Nomura, Takehiro Oyakawa, Rajiv K. Kalia, Aiichiro Nakano, Priya Vashishta
Euro-Par2
2007 Parallel history matching and associated forecast at the center for interactive smart oilfield technologies
Ken-ichi Nomura, Rajiv K. Kalia, Aiichiro Nakano, Priya Vashishta, Jorge L. Landa
J. Supercomput.1