Demo Data from EDBT 2026 / reviewers in the wild / expert
Yoshimasa Tanaka
dblp:81/1325
· DBLP profile ↗
2ranked-venue papers
0as first author
0since 2021 · last 2015
—ORCID · conflict
Domains — the database's venue-derived domains; a paper can count in several
Applied, interdisciplinary, general and emerging computing · 2Software engineering, systems software and programming languages · 1
Expertise — from the expertise taxonomy: the topics of the expert's papers under the CCF categories. A weight counts papers with recency: 1 for a paper about the topic, 0.3 when the topic is its context, halved every five years.
| Interdisciplinary, comprehensive, and emerging computing
1 paper |
Bioinformatics and computational biology · 100% |
Topics — the 5 heaviest of 5, each with the papers that count most for it
| Topic | Weight | Papers | Last | Evidence papers |
|---|---|---|---|---|
Bioinformatics and computational biology
comparative genomics |
0.0 | 1 | 2001 | ORI-GENE: gene classification based on the evolutionary tree · Bioinform. 2001 |
Bioinformatics and computational biology › functional genomics
gene classification |
0.0 | 1 | 2001 | ORI-GENE: gene classification based on the evolutionary tree · Bioinform. 2001 |
Bioinformatics and computational biology
phylogenetics |
0.0 | 1 | 2001 | ORI-GENE: gene classification based on the evolutionary tree · Bioinform. 2001 |
Bioinformatics and computational biology › phylogenetics
phylogenetic tree analysis |
0.0 | 1 | 2001 | ORI-GENE: gene classification based on the evolutionary tree · Bioinform. 2001 |
Bioinformatics and computational biology › sequence analysis
sequence similarity search |
0.0 | 1 | 2001 | ORI-GENE: gene classification based on the evolutionary tree · Bioinform. 2001 |
Methods — techniques the papers use, named apart from their topics
phylogenetic profiling · 0.0homology search · 0.0
| Year | Publication | Venue | Position |
|---|---|---|---|
| 2015 | Forecasting Auroral Substorms from Observed Data with a Supervised Learning AlgorithmabstractAuroras are beautiful phenomena and attract many people. However, its physical model still remains a subject of dispute because it is caused by the interaction of diverse areas, such as solar wind, magnetosphere, and ionosphere, and it is difficult to simultaneously obtain data in such wide areas. This paper is devoted to forecasting the onset of brightening of auroras followed by poleward expansion, called auroral substorms. We adopt a data-driven approach, instead of physical models of auroras. This approach requires labeled data, which shows when auroras appeared. However, this is challenging because there exist a wide variety of observed data from diverse areas while they are not tied with onset time of auroras. We identified auroral substorms using all-sky images obtained at Tromso, Norway. Then, we chose solar wind and geomagnetic field data as the first attempt toward the goal, out of many types of data, and associated them with the onset times of the identified auroral substorms. We trained a classifier of the support vector machine, which is a typical supervised learning algorithm, using the constructed data, and the classifier achieves around 78% classification accuracy at 5-fold cross validation. Takanori Tanaka, Daisuke Kitao, Yuka Sato, Yoshimasa Tanaka, Daisuke Ikeda |
e-Science | 4 |
| 2001 | ORI-GENE: gene classification based on the evolutionary treeabstractMOTIVATION: Genome projects have produced large amounts of data on the sequences of new genes whose functions are as yet unknown. The functions of new genes are usually inferred by comparing their sequences with those of known genes, but evaluation of the sequence homology of individual genes does not make the most of the available sequence information. Therefore, new methods and tools for extracting more biological information from homology searches would be advantageous. RESULTS: We have developed a computational tool, ORI-GENE, to analyze the results of sequence homology searches from the perspective of the evolution of selected sets of new genes. ORI-GENE has a graphical interface and accomplishes two important tasks: first, based on the output of homology searches, it identifies species with similar genes and displays their pattern of distribution on the phylogenetic tree. This function enables one to infer the way in which a given gene may have propagated among species over time. Second, from the distribution patterns, it predicts the point at which a given gene may have been first acquired (i.e. its 'origin'), then classifies the gene on that basis. Because it makes use of available evolutionary information to show the way in which genes cluster among species, ORI-GENE should be an effective tool for the screening and classification of new genes revealed by genome analysis. AVAILABILITY: ORI-GENE is retrievable via the Internet at: http://www.rtc.riken.go.jp/jouhou/ORI-GENE. Hideaki Mizuno, Yoshimasa Tanaka, Kenta Nakai, Akinori Sarai |
Bioinform. | 2 |