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Michael Eugene Stillman

dblp:82/2374 · DBLP profile ↗
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11ranked-venue papers
1as first author
1since 2021 · last 2023
0000-0003-0078-3116ORCID · reported

Domains — the database's venue-derived domains; a paper can count in several

Theory of computation · 9 · 1 first-authorArtificial intelligence and machine learning · 1Applied, interdisciplinary, general and emerging computing · 1 · 1 since 2021

Expertise — from the expertise taxonomy: the topics of the expert's papers under the CCF categories. A weight counts papers with recency: 1 for a paper about the topic, 0.3 when the topic is its context, halved every five years.

Interdisciplinary, comprehensive, and emerging computing
1 paper
Bioinformatics and computational biology · 100%
Artificial intelligence
1 paper
Reinforcement learning · 100%
Theoretical computer science
1 paper
Algorithms and data structures · 100%

Topics — the 4 heaviest of 5, each with the papers that count most for it

TopicWeightPapersLastEvidence papers
Bioinformatics and computational biology
systems biology
0.712023
Cyclone: open-source package for simulation and analysis of finite dynamical systems · Bioinform. 2023
Machine learning › Reinforcement learning
policy learning
0.412020
Learning Selection Strategies in Buchberger's Algorithm · ICML 2020
Algorithms and data structures
symbolic computation
0.412020
Learning Selection Strategies in Buchberger's Algorithm · ICML 2020
Bioinformatics and computational biology › network bioinformatics › biological network analysis › network analysis
boolean network analysis
0.212023
Cyclone: open-source package for simulation and analysis of finite dynamical systems · Bioinform. 2023

Methods — techniques the papers use, named apart from their topics

reinforcement learning · 0.9proximal policy optimization · 0.9state space simulation · 0.7
YearPublicationVenuePosition
2023 Cyclone: open-source package for simulation and analysis of finite dynamical systems
abstract
MOTIVATION: While there are software packages that analyze Boolean, ternary, or other multi-state models, none compute the complete state space of function-based models over any finite set. Results: We propose Cyclone, a simple light-weight software package which simulates the complete state space for a finite dynamical system over any finite set. AVAILABILITY AND IMPLEMENTATION: Source code is freely available at https://github.com/discretedynamics/cyclone under the Apache-2.0 license.
Elena S. Dimitrova, Adam C. Knapp, Brandilyn Stigler, Michael Eugene Stillman
Bioinform.4
2020 Learning Selection Strategies in Buchberger's Algorithm
abstract
Studying the set of exact solutions of a system of polynomial equations largely depends on a single iterative algorithm, known as Buchberger’s algorithm. Optimized versions of this algorithm are crucial for many computer algebra systems (e.g., Mathematica, Maple, Sage). We introduce a new approach to Buchberger’s algorithm that uses reinforcement learning agents to perform S-pair selection, a key step in the algorithm. We then study how the difficulty of the problem depends on the choices of domain and distribution of polynomials, about which little is known. Finally, we train a policy model using proximal policy optimization (PPO) to learn S-pair selection strategies for random systems of binomial equations. In certain domains, the trained model outperforms state-of-the-art selection heuristics in total number of polynomial additions performed, which provides a proof-of-concept that recent developments in machine learning have the potential to improve performance of algorithms in symbolic computation.
Dylan Peifer, Michael Eugene Stillman, Daniel Halpern-Leistner
ICML2
2012 Practical Gröbner basis computation
abstract
We report on our experiences exploring state of the art Gröbner basis computation. We investigate signature based algorithms in detail. We also introduce new practical data structures and computational techniques for use in both signature based Gröbner basis algorithms and more traditional variations of the classic Buchberger algorithm. Our conclusions are based on experiments using our new freely available open source standalone C++ library.
Bjarke Hammersholt Roune, Michael Eugene Stillman
ISSAC2
2011 Parameter estimation for Boolean models of biological networks
Elena S. Dimitrova, Luis David García-Puente, Franziska Hinkelmann, Abdul Salam Jarrah, Reinhard C. Laubenbacher, Brandilyn Stigler, Michael Eugene Stillman, Paola Vera-Licona
Theor. Comput. Sci.7
2007 On the geometry of parametrized bicubic surfaces
André Galligo, Michael Eugene Stillman
J. Symb. Comput.2
2005 Algebraic geometry of Bayesian networks
Luis David García-Puente, Michael Eugene Stillman, Bernd Sturmfels
J. Symb. Comput.2
2003 Computing in algebraic geometry and commutative algebra using Macaulay 2
Michael Eugene Stillman
J. Symb. Comput.1
2000 Cohomology on Toric Varieties and Local Cohomology with Monomial Supports
David Eisenbud, Mircea Mustala, Michael Eugene Stillman
J. Symb. Comput.3
1998 Strategies for Computing Minimal Free Resolutions
Roberto La Scala, Michael Eugene Stillman
J. Symb. Comput.2
1992 Computation of Hilbert Functions
David Bayer, Michael Eugene Stillman
J. Symb. Comput.2
1988 On the Complexity of Computing Syzygies
abstract
We give a self-contained exposition of Mayr & Meyer's example of a polynomial ideal exhibiting double exponential degrees for the ideal membership problem, and generalise this example to exhibit minimal syzygies of double exponential degree. This demonstrates the existence of subschemes of projective space of double exponential regularity.
David Bayer, Michael Eugene Stillman
J. Symb. Comput.2