Demonstration venue · read-only. Every page can be browsed; the buttons that would change it are switched off. Create an account to run TaxoReview on your own data. A simulation from public publication records: the people listed were not invited and did not agree to review.
? Tutorial for this page

Thomas A. Trikalinos

dblp:82/8254 · DBLP profile ↗
← Back
9ranked-venue papers
0as first author
1since 2021 · last 2023
—ORCID · none

Domains — the database's venue-derived domains; a paper can count in several

Artificial intelligence and machine learning · 6 · 1 since 2021Databases, data management, data science and information retrieval · 3Applied, interdisciplinary, general and emerging computing · 2Graphics, computer vision, multimedia, augmented reality and games · 1

Expertise — from the expertise taxonomy: the topics of the expert's papers under the CCF categories. A weight counts papers with recency: 1 for a paper about the topic, 0.3 when the topic is its context, halved every five years.

Artificial intelligence
3 papers
Information extraction and text analysis · 35% Probabilistic and Bayesian machine learning · 20% Generative modeling · 18%
Interdisciplinary, comprehensive, and emerging computing
3 papers
Medical and health informatics · 100%
Databases, data mining, and information retrieval
3 papers
Data mining · 85% Machine learning and data management · 15%
Human-computer interaction and pervasive computing
1 paper
Human-AI interaction · 100%

Topics — the 12 heaviest of 15, each with the papers that count most for it

TopicWeightPapersLastEvidence papers
Machine learning › Generative modeling
generative model
0.212013
A Generative Joint, Additive, Sequential Model of Topics and Speech Acts in Patient-Doctor Communication · EMNLP 2013
Natural language and speech › Information extraction and text analysis › dialogue analysis
speech act recognition
0.212013
A Generative Joint, Additive, Sequential Model of Topics and Speech Acts in Patient-Doctor Communication · EMNLP 2013
Natural language and speech › Information extraction and text analysis
topic model
0.212013
A Generative Joint, Additive, Sequential Model of Topics and Speech Acts in Patient-Doctor Communication · EMNLP 2013
Machine learning › Learning paradigms
supervised learning
0.112011
The Constrained Weight Space SVM: Learning with Ranked Features · ICML 2011
Machine learning › Kernel, tree and ensemble methods
support vector machine
0.112011
The Constrained Weight Space SVM: Learning with Ranked Features · ICML 2011
Data mining › predictive modeling › classification › ensemble learning
bagging
0.112011
Class Imbalance, Redux · ICDM 2011
Data mining › predictive modeling
classification
0.112011
Class Imbalance, Redux · ICDM 2011
Data mining › predictive modeling › classification
ensemble learning
0.112011
Class Imbalance, Redux · ICDM 2011
Data mining › dimensionality reduction
feature selection
0.112011
The Constrained Weight Space SVM: Learning with Ranked Features · ICML 2011
Data mining › predictive modeling › classification
imbalanced classification
0.112011
Class Imbalance, Redux · ICDM 2011
Machine learning and data management
active learning
0.112010
Active learning for biomedical citation screening · KDD 2010
Medical and health informatics › evidence-based medicine
systematic review
0.012010
Active learning for biomedical citation screening · KDD 2010

Methods — techniques the papers use, named apart from their topics

qualitative analysis · 1.3interview study · 1.3log-linear model · 0.5clustering · 0.4constrained weight space SVM · 0.2linear programming · 0.2decision theory · 0.2joint modeling · 0.2probabilistic analysis · 0.1bootstrap sampling · 0.1
YearPublicationVenuePosition
2023 Appraising the Potential Uses and Harms of LLMs for Medical Systematic Reviews
abstract
Medical systematic reviews play a vital role in healthcare decision making and policy.However, their production is time-consuming, limiting the availability of high-quality and up-todate evidence summaries.Recent advances in large language models (LLMs) offer the potential to automatically generate literature reviews on demand, addressing this issue.However, LLMs sometimes generate inaccurate (and potentially misleading) texts by "hallucination" or omission.In healthcare, this can make LLMs unusable at best and dangerous at worst.We conducted 16 interviews with international systematic review experts to characterize the perceived utility and risks of LLMs in the specific context of medical evidence reviews.Experts indicated that LLMs can assist in the writing process by drafting summaries, generating templates, distilling information, and crosschecking information.But they also raised concerns regarding confidently composed but inaccurate LLM outputs and other potential downstream harms, including decreased accountability and proliferation of low-quality reviews.Informed by this qualitative analysis, we identify criteria for rigorous evaluation of biomedical LLMs aligned with domain expert views.
Hye Sun Yun, Iain James Marshall, Thomas A. Trikalinos, Byron C. Wallace
EMNLP3
2014 Identifying Differences in Physician Communication Styles with a Log-Linear Transition Component Model
abstract
We consider the task of grouping doctors with respect to communication patterns exhibited in outpatient visits. We propose a novel approach toward this end in which we model speech act transitions in conversations via a log-linear model incorporating physician specific components. We train this model over transcripts of outpatient visits annotated with speech act codes and then cluster physicians in (a transformation of) this parameter space. We find significant correlations between the induced groupings and patient survey response data comprising ratings of physician communication. Furthermore, the novel sequential component model we leverage to induce this clustering allows us to explore differences across these groups. This work demonstrates how statistical AI might be used to better understand (and ultimately improve) physician communication.
Byron C. Wallace, Issa J. Dahabreh, Thomas A. Trikalinos, Michael Barton Laws, Ira B. Wilson, Eugene Charniak
AAAI3
2014 A large-scale quantitative analysis of latent factors and sentiment in online doctor reviews
abstract
Online physician reviews are a massive and potentially rich source of information capturing patient sentiment regarding healthcare. We analyze a corpus comprising nearly 60,000 such reviews with a state-of-the-art probabilistic model of text. We describe a probabilistic generative model that captures latent sentiment across aspects of care (eg, interpersonal manner). We target specific aspects by leveraging a small set of manually annotated reviews. We perform regression analysis to assess whether model output improves correlation with state-level measures of healthcare. We report both qualitative and quantitative results. Model output correlates with state-level measures of quality healthcare, including patient likelihood of visiting their primary care physician within 14 days of discharge (p=0.03), and using the proposed model better predicts this outcome (p=0.10). We find similar results for healthcare expenditure. Generative models of text can recover important information from online physician reviews, facilitating large-scale analyses of such reviews.
Byron C. Wallace, Michael J. Paul, Urmimala Sarkar, Thomas A. Trikalinos, Mark Dredze
J. Am. Medical Informatics Assoc.4
2013 A Generative Joint, Additive, Sequential Model of Topics and Speech Acts in Patient-Doctor Communication
abstract
We develop a novel generative model of conversation that jointly captures both the topical content and the speech act type associated with each utterance.Our model expresses both token emission and state transition probabilities as log-linear functions of separate components corresponding to topics and speech acts (and their interactions).We apply this model to a dataset comprising annotated patient-physician visits and show that the proposed joint approach outperforms a baseline univariate model.
Byron C. Wallace, Thomas A. Trikalinos, Michael Barton Laws, Ira B. Wilson, Eugene Charniak
EMNLP2
2011 Class Imbalance, Redux
abstract
Class imbalance (i.e., scenarios in which classes are unequally represented in the training data) occurs in many real-world learning tasks. Yet despite its practical importance, there is no established theory of class imbalance, and existing methods for handling it are therefore not well motivated. In this work, we approach the problem of imbalance from a probabilistic perspective, and from this vantage identify dataset characteristics (such as dimensionality, sparsity, etc.) that exacerbate the problem. Motivated by this theory, we advocate the approach of bagging an ensemble of classifiers induced over balanced bootstrap training samples, arguing that this strategy will often succeed where others fail. Thus in addition to providing a theoretical understanding of class imbalance, corroborated by our experiments on both simulated and real datasets, we provide practical guidance for the data mining practitioner working with imbalanced data.
Byron C. Wallace, Kevin Small, Carla E. Brodley, Thomas A. Trikalinos
ICDM4
2011 The Constrained Weight Space SVM: Learning with Ranked Features
Kevin Small, Byron C. Wallace, Carla E. Brodley, Thomas A. Trikalinos
ICML4
2011 Who Should Label What? Instance Allocation in Multiple Expert Active Learning
abstract
The active learning (AL) framework is an increasingly popular strategy for reducing the amount of human labeling effort required to induce a predictive model. Most work in AL has assumed that a single, infallible oracle provides labels requested by the learner at a fixed cost. However, real-world applications suitable for AL often include multiple domain experts who provide labels of varying cost and quality. We explore this multiple expert active learning (MEAL) scenario and develop a novel algorithm for instance allocation that exploits the meta-cognitive abilities of novice (cheap) experts in order to make the best use of the experienced (expensive) annotators. We demonstrate that this strategy outperforms strong baseline approaches to MEAL on both a sentiment analysis dataset and two datasets from our motivating application of biomedical citation screening. Furthermore, we provide evidence that novice labelers are often aware of which instances they are likely to mislabel.
Byron C. Wallace, Kevin Small, Carla E. Brodley, Thomas A. Trikalinos
SDM4
2010 Active learning for biomedical citation screening
abstract
Active learning (AL) is an increasingly popular strategy for mitigating the amount of labeled data required to train classifiers, thereby reducing annotator effort. We describe a real-world, deployed application of AL to the problem of biomedical citation screening for systematic reviews at the Tufts Medical Center's Evidence-based Practice Center. We propose a novel active learning strategy that exploits a priori domain knowledge provided by the expert (specifically, labeled features)and extend this model via a Linear Programming algorithm for situations where the expert can provide ranked labeled features. Our methods outperform existing AL strategies on three real-world systematic review datasets. We argue that evaluation must be specific to the scenario under consideration. To this end, we propose a new evaluation framework for finite-pool scenarios, wherein the primary aim is to label a fixed set of examples rather than to simply induce a good predictive model. We use a method from medical decision theory for eliciting the relative costs of false positives and false negatives from the domain expert, constructing a utility measure of classification performance that integrates the expert preferences. Our findings suggest that the expert can, and should, provide more information than instance labels alone. In addition to achieving strong empirical results on the citation screening problem, this work outlines many important steps for moving away from simulated active learning and toward deploying AL for real-world applications.
Byron C. Wallace, Kevin Small, Carla E. Brodley, Thomas A. Trikalinos
KDD4
2010 Semi-automated screening of biomedical citations for systematic reviews
abstract
BACKGROUND: Systematic reviews address a specific clinical question by unbiasedly assessing and analyzing the pertinent literature. Citation screening is a time-consuming and critical step in systematic reviews. Typically, reviewers must evaluate thousands of citations to identify articles eligible for a given review. We explore the application of machine learning techniques to semi-automate citation screening, thereby reducing the reviewers' workload. RESULTS: We present a novel online classification strategy for citation screening to automatically discriminate "relevant" from "irrelevant" citations. We use an ensemble of Support Vector Machines (SVMs) built over different feature-spaces (e.g., abstract and title text), and trained interactively by the reviewer(s). Semi-automating the citation screening process is difficult because any such strategy must identify all citations eligible for the systematic review. This requirement is made harder still due to class imbalance; there are far fewer "relevant" than "irrelevant" citations for any given systematic review. To address these challenges we employ a custom active-learning strategy developed specifically for imbalanced datasets. Further, we introduce a novel undersampling technique. We provide experimental results over three real-world systematic review datasets, and demonstrate that our algorithm is able to reduce the number of citations that must be screened manually by nearly half in two of these, and by around 40% in the third, without excluding any of the citations eligible for the systematic review. CONCLUSIONS: We have developed a semi-automated citation screening algorithm for systematic reviews that has the potential to substantially reduce the number of citations reviewers have to manually screen, without compromising the quality and comprehensiveness of the review.
Byron C. Wallace, Thomas A. Trikalinos, Joseph Lau, Carla E. Brodley, Christopher H. Schmid
BMC Bioinform.2