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Kamil Erguler

dblp:83/8321 · DBLP profile ↗
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1ranked-venue papers
0as first author
0since 2021 · last 2010
0000-0002-2674-592XORCID · reported

Domains — the database's venue-derived domains; a paper can count in several

Applied, interdisciplinary, general and emerging computing · 1

Expertise — from the expertise taxonomy: the topics of the expert's papers under the CCF categories. A weight counts papers with recency: 1 for a paper about the topic, 0.3 when the topic is its context, halved every five years.

Interdisciplinary, comprehensive, and emerging computing
1 paper
Bioinformatics and computational biology · 100%

Topics — the 2 heaviest of 2, each with the papers that count most for it

TopicWeightPapersLastEvidence papers
Bioinformatics and computational biology
approximate bayesian computation
0.112010
ABC-SysBio - approximate Bayesian computation in Python with GPU support · Bioinform. 2010
Bioinformatics and computational biology
systems biology
0.112010
ABC-SysBio - approximate Bayesian computation in Python with GPU support · Bioinform. 2010

Methods — techniques the papers use, named apart from their topics

approximate bayesian computation · 0.1ABC rejection sampler · 0.1ABC SMC · 0.1
YearPublicationVenuePosition
2010 ABC-SysBio - approximate Bayesian computation in Python with GPU support
abstract
MOTIVATION: The growing field of systems biology has driven demand for flexible tools to model and simulate biological systems. Two established problems in the modeling of biological processes are model selection and the estimation of associated parameters. A number of statistical approaches, both frequentist and Bayesian, have been proposed to answer these questions. RESULTS: Here we present a Python package, ABC-SysBio, that implements parameter inference and model selection for dynamical systems in an approximate Bayesian computation (ABC) framework. ABC-SysBio combines three algorithms: ABC rejection sampler, ABC SMC for parameter inference and ABC SMC for model selection. It is designed to work with models written in Systems Biology Markup Language (SBML). Deterministic and stochastic models can be analyzed in ABC-SysBio. AVAILABILITY: http://abc-sysbio.sourceforge.net
Juliane Liepe, Chris P. Barnes, Erika Cule, Kamil Erguler, Paul D. W. Kirk, Tina Toni, Michael P. H. Stumpf
Bioinform.4