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Simon R. Andrews

dblp:87/9662 · DBLP profile ↗
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1ranked-venue papers
0as first author
0since 2021 · last 2011
—ORCID · none

Domains — the database's venue-derived domains; a paper can count in several

Applied, interdisciplinary, general and emerging computing · 1

Expertise — from the expertise taxonomy: the topics of the expert's papers under the CCF categories. A weight counts papers with recency: 1 for a paper about the topic, 0.3 when the topic is its context, halved every five years.

Interdisciplinary, comprehensive, and emerging computing
1 paper
Bioinformatics and computational biology · 100%

Topics — the 5 heaviest of 5, each with the papers that count most for it

TopicWeightPapersLastEvidence papers
Bioinformatics and computational biology › epigenomics › DNA methylation › DNA methylation analysis
bisulfite sequencing		 0.112011
Bismark: a flexible aligner and methylation caller for Bisulfite-Seq applications · Bioinform. 2011
Bioinformatics and computational biology › epigenomics › DNA methylation
DNA methylation analysis		 0.112011
Bismark: a flexible aligner and methylation caller for Bisulfite-Seq applications · Bioinform. 2011
Bioinformatics and computational biology
epigenomics		 0.112011
Bismark: a flexible aligner and methylation caller for Bisulfite-Seq applications · Bioinform. 2011
Bioinformatics and computational biology › sequence analysis
read mapping		 0.112011
Bismark: a flexible aligner and methylation caller for Bisulfite-Seq applications · Bioinform. 2011
Bioinformatics and computational biology › genomics
sequencing		 0.112011
Bismark: a flexible aligner and methylation caller for Bisulfite-Seq applications · Bioinform. 2011

Methods — techniques the papers use, named apart from their topics

methylation calling · 0.1bisulfite alignment · 0.1
YearPublicationVenuePosition
2011 Bismark: a flexible aligner and methylation caller for Bisulfite-Seq applications
abstract
SUMMARY: A combination of bisulfite treatment of DNA and high-throughput sequencing (BS-Seq) can capture a snapshot of a cell's epigenomic state by revealing its genome-wide cytosine methylation at single base resolution. Bismark is a flexible tool for the time-efficient analysis of BS-Seq data which performs both read mapping and methylation calling in a single convenient step. Its output discriminates between cytosines in CpG, CHG and CHH context and enables bench scientists to visualize and interpret their methylation data soon after the sequencing run is completed. AVAILABILITY AND IMPLEMENTATION: Bismark is released under the GNU GPLv3+ licence. The source code is freely available from www.bioinformatics.bbsrc.ac.uk/projects/bismark/.
Felix Krueger, Simon R. Andrews
 Bioinform.2