EDBT 2026 Demo / reviewers in the wild / expert
Wayne Joubert
dblp:90/2993
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14ranked-venue papers
4as first author
4since 2021 · last 2024
0000-0003-4771-998XORCID · corroborated
Domains — the database's venue-derived domains; a paper can count in several
Systems, architecture and hardware · 14 · 4 first-author · 4 since 2021
| Year | Publication | Venue | Position |
|---|---|---|---|
| 2024 | Early experiences evaluating the HPE/Cray ecosystem for AMD GPUsabstractSummary The Oak Ridge Leadership Computing Facility (OLCF) has a long history of supporting and promoting GPU‐accelerated computing starting with the deployment of the Titan supercomputer in 2021 and continuing with the Summit supercomputer which has a theoretical peak performance of approximately 200 petaflops. Because the majority of Summit's computational power comes from its 27,972 GPUs, users must port their applications to one of the supported programming models in order to make efficient use of the system. To prepare the transition to Frontier, the OLCF's exascale supercomputer, users will need to adapt to an entirely new ecosystem which will include new hardware and software technologies. First, users will need to familiarize themselves with the AMD Radeon GPU architecture. Furthermore, users who have been previously relying on CUDA will need to transition to the Heterogeneous‐Computing Interface for Portability (HIP) or one of the other supported programming models (e.g., OpenMP, OpenACC). In this work, we describe our initial experiences and lessons learned in porting three applications or proxy apps currently running on Summit to the HPE/Cray ecosystem to leverage the compute power from AMD GPUs: minisweep, GenASiS, and Sparkler. Each one is representative of current production workloads utilized at the OLCF, different programming languages, and different programming models. Verónica G. Vergara Larrea, Reuben D. Budiardja, Wayne Joubert |
Concurr. Comput. Pract. Exp. | 3 |
| 2023 | Frontier: Exploring ExascaleabstractAs the US Department of Energy (DOE) computing facilities began deploying petascale systems in 2008, DOE was already setting its sights on exascale. In that year, DARPA published a report on the feasibility of reaching exascale. The report authors identified several key challenges in the pursuit of exascale including power, memory, concurrency, and resiliency. That report informed the DOE's computing strategy for reaching exascale. With the deployment of Oak Ridge National Laboratory's Frontier supercomputer, we have officially entered the exascale era. In this paper, we discuss Frontier's architecture, how it addresses those challenges, and describe some early application results from Oak Ridge Leadership Computing Facility's Center of Excellence and the Exascale Computing Project. Scott Atchley, Christopher Zimmer 0001, Jack Lange, David E. Bernholdt, Verónica G. Vergara Larrea, Michael J. Brim, Reuben D. Budiardja, Sunita Chandrasekaran, Markus Eisenbach 0002, Thomas M. Evans 0001, Matthew Ezell, Nicholas Frontiere, Antigoni Georgiadou, Joseph Glenski, Philipp Grete, Steven P. Hamilton, John K. Holmen, Axel Huebl, Daniel A. Jacobson, Wayne Joubert, Kim H. McMahon, Elia Merzari, Stan G. Moore, Andrew Myers 0001, Stephen Nichols, Sarp Oral, Thomas Papatheodore, Danny Perez, David M. Rogers 0001, Evan Schneider, Jean-Luc Vay, P. K. Yeung |
SC | 21 |
| 2023 | Experiences readying applications for ExascaleabstractThe advent of Exascale computing invites an assessment of existing best practices for developing application readiness on the world's largest supercomputers. This work details observations from the last four years in preparing scientific applications to run on the Oak Ridge Leadership Computing Facility's (OLCF) Frontier system. This paper addresses a range of topics in software including programmability, tuning, and portability considerations that are key to moving applications from existing systems to future installations. A set of representative workloads provides case studies for general system and software testing. We evaluate the use of early access systems for development across several generations of hardware. Finally, we discuss how best practices were identified and disseminated to the community through a wide range of activities including user-guides and trainings. We conclude with recommendations for ensuring application readiness on future leadership computing systems. Nicholas Malaya, O. E. Bronson Messer, Joseph Glenski, Antigoni Georgiadou, Justin Lietz, Kalyana C. Gottiparthi, Marcus S. Day, Jackie Chen, Jon S. Rood, Lucas Esclapez, James B. White III, Gustav R. Jansen, Nicholas Curtis, Stephen Nichols, Jakub Kurzak, Noel Chalmers, Chip Freitag, Paul T. Bauman, Alessandro Fanfarillo, Reuben D. Budiardja, Thomas Papatheodore, Nicholas Frontiere, Damon McDougall, Matthew R. Norman, Sarat Sreepathi, Philip C. Roth, Dmytro Bykov, Noah Wolfe, Paul Mullowney, Markus Eisenbach 0002, Marc T. Henry de Frahan, Wayne Joubert |
SC | 32 |
| 2022 | Climbing the Summit and Pushing the Frontier of Mixed Precision Benchmarks at Extreme ScaleabstractThe rise of machine learning (ML) applications and their use of mixed precision to perform interesting science are driving forces behind AI for science on HPC. The convergence of ML and HPC with mixed precision offers the possibility of transformational changes in computational science. The HPL-AI benchmark is designed to measure the performance of mixed precision arithmetic as opposed to the HPL benchmark which measures double precision performance. Pushing the limits of systems at extreme scale is nontrivial -little public literature explores optimization of mixed precision computations at this scale. In this work, we demonstrate how to scale up the HPL-AI benchmark on the pre-exascale Summit and exascale Frontier systems at the Oak Ridge Leadership Computing Facility (OLCF) with a cross-platform design. We present the implementation, performance results, and a guideline of optimization strategies employed for delivering portable performance on both AMD and NVIDIA GPUs at extreme scale. Hao Lu 0001, Michael A. Matheson, Vladyslav Oles, J. Austin Ellis, Wayne Joubert, Feiyi Wang |
SC | 5 |
| 2020 | Experiences in porting mini-applications to OpenACC and OpenMP on heterogeneous systemsabstractSummary This article studies mini‐applications—Minisweep, GenASiS, GPP, and FF—that use computational methods commonly encountered in HPC. We have ported these applications to develop OpenACC and OpenMP versions, and evaluated their performance on Titan (Cray XK7 with K20x GPUs), Cori (Cray XC40 with Intel KNL), Summit (IBM AC922 with Volta GPUs), and Cori‐GPU (Cray CS‐Storm 500NX with Intel Skylake and Volta GPUs). Our goals are for these new ports to be useful to both application and compiler developers, to document and describe the lessons learned and the methodology to create optimized OpenMP and OpenACC versions, and to provide a description of possible migration paths between the two specifications. Cases where specific directives or code patterns result in improved performance for a given architecture are highlighted. We also include discussions of the functionality and maturity of the latest compilers available on the above platforms with respect to OpenACC or OpenMP implementations. Verónica G. Vergara Larrea, Reuben D. Budiardja, Rahulkumar Gayatri, Christopher S. Daley, Oscar R. Hernandez, Wayne Joubert |
Concurr. Comput. Pract. Exp. | 6 |
| 2019 | Are we witnessing the spectre of an HPC meltdown?abstractSummary We measure and analyze the performance observed when running applications and benchmarks before and after the Meltdown and Spectre fixes have been applied to the Cray supercomputers and supporting systems at the Oak Ridge Leadership Computing Facility (OLCF). Of particular interest is the effect of these fixes on applications selected from the OLCF portfolio when running at scale. This comprehensive study presents results from experiments run on Titan, Eos, Cumulus, and Percival supercomputers at the OLCF. The results from this study are useful for HPC users running on Cray supercomputers and serve to better understand the impact that these two vulnerabilities have on diverse HPC workloads at scale. Verónica G. Vergara Larrea, Michael J. Brim, Wayne Joubert, Swen Böhm, Matthew B. Baker, Oscar R. Hernandez, Sarp Oral, James Simmons, Don E. Maxwell |
Concurr. Comput. Pract. Exp. | 3 |
| 2019 | Parallel accelerated Custom Correlation Coefficient calculations for genomics applications
Wayne Joubert, James Nance, Sharlee Climer, Deborah A. Weighill, Daniel A. Jacobson |
Parallel Comput. | 1 |
| 2018 | Attacking the opioid epidemic: determining the epistatic and pleiotropic genetic architectures for chronic pain and opioid addiction
Wayne Joubert, Deborah A. Weighill, David Kainer, Sharlee Climer, Amy Justice, Kjiersten Fagnan, Daniel A. Jacobson |
SC | 1 |
| 2018 | The design, deployment, and evaluation of the CORAL pre-exascale systems
Sudharshan S. Vazhkudai, Bronis R. de Supinski, Arthur S. Bland, Al Geist, James C. Sexton, James A. Kahle, Christopher Zimmer 0001, Scott Atchley, Sarp Oral, Don E. Maxwell, Verónica G. Vergara Larrea, Adam Bertsch, Robin Goldstone, Wayne Joubert, Christopher M. Chambreau, David Appelhans, Robert Blackmore, Ben Casses, George Chochia, Gene Davison, Matthew Ezell, Thomas Gooding, Elsa Gonsiorowski, Leopold Grinberg, Bill Hanson, Bill Hartner, Ian Karlin, Matthew L. Leininger, Dustin Leverman, Chris Marroquin, Adam Moody, Martin Ohmacht, Ramesh Pankajakshan, Fernando Pizzano, James H. Rogers, Bryan S. Rosenburg, Drew Schmidt, Mallikarjun Shankar, Feiyi Wang, Py Watson, Bob Walkup, Lance D. Weems, Junqi Yin |
SC | 14 |
| 2018 | Parallel accelerated vector similarity calculations for genomics applications
Wayne Joubert, James Nance, Deborah A. Weighill, Daniel A. Jacobson |
Parallel Comput. | 1 |
| 2015 | Developing MiniApps on Modern Platforms Using Multiple Programming ModelsabstractWe have developed a set of reduced, proxy applications ("MiniApps") based on large-scale application codes supported at the Oak Ridge Leadership Computing Facility (OLCF). The MiniApps are designed to encapsulate the details of the most important (i.e. the most time-consuming and/or unique) facets of the applications that run in production mode on the OLCF. In each case, we have produced or plan to produce individual versions of the MiniApps using different specific programming models (e.g., OpenACC, CUDA, OpenMP). We describe some of our initial observations regarding these different implementations along with estimates of how closely the MiniApps track the actual performance characteristics (in particular, the overall scalability) of the large-scale applications from which they are derived. O. E. Bronson Messer, Eduardo F. D'Azevedo, Judith C. Hill, Wayne Joubert, S. Laosooksathit, Arnold N. Tharrington |
CLUSTER | 4 |
| 2015 | The in-silico lab-on-a-chip: petascale and high-throughput simulations of microfluidics at cell resolutionabstractWe present simulations of blood and cancer cell separation in complex microfluidic channels with subcellular resolution, demonstrating unprecedented time to solution, performing at 65.5% of the available 39.4 PetaInstructions/s in the 18, 688 nodes of the Titan supercomputer. Diego Rossinelli, Yu-Hang Tang, Kirill Lykov, Dmitry Alexeev, Massimo Bernaschi, Panagiotis Hadjidoukas, Mauro Bisson, Wayne Joubert, Christian Conti, George Em Karniadakis, Massimiliano Fatica, Igor Pivkin, Petros Koumoutsakos |
SC | 8 |
| 2012 | An analysis of computational workloads for the ORNL Jaguar systemabstractThis study presents an analysis of science application workloads for the Jaguar Cray XT5 system during its tenure as a 2.3 petaflop supercomputer at Oak Ridge National Laboratory. Jaguar was the first petascale system to be deployed for open science and has been one of the world's top three supercomputers for six releases of the TOP500 list. Its workload is investigated here as a representative of the growing worldwide install base of petascale systems and also as a foreshadowing of science workloads to be expected for future systems. The study considers characteristics of the Jaguar workload such as resource utilization, typical job characteristics, most heavily used applications, application scaling and application usage patterns. Implications of these findings are considered for current petascale workflows and for exascale systems to be deployed later this decade. Wayne Joubert, Shi-Quan Su |
ICS | 1 |
| 2012 | High performance radiation transport simulations: preparing for TitanabstractIn this paper we describe the Denovo code system. Denovo solves the six-dimensional, steady-state, linear Boltzmann transport equation, of central importance to nuclear technology applications such as reactor core analysis (neutronics), radiation shielding, nuclear forensics and radiation detection. The code features multiple spatial differencing schemes, state-of-the-art linear solvers, the Koch-Baker-Alcouffe (KBA) parallel-wavefront sweep algorithm for inverting the transport operator, a new multilevel energy decomposition method scaling to hundreds of thousands of processing cores, and a modern, novel code architecture that supports straightforward integration of new features. In this paper we discuss the performance of Denovo on the 20+ petaflop ORNL GPU-based system, Titan. We describe algorithms and techniques used to exploit the capabilities of Titan's heterogeneous compute node architecture and the challenges of obtaining good parallel performance for this sparse hyperbolic PDE solver containing inherently sequential computations. Numerical results demonstrating Denovo performance on early Titan hardware are presented. Christopher Baker, Gregory G. Davidson, Thomas M. Evans 0001, Steven P. Hamilton, Joshua J. Jarrell, Wayne Joubert |
SC | 6 |