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Anya Castillo

dblp:96/10063 · DBLP profile ↗
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1ranked-venue papers
0as first author
0since 2021 · last 2011
—ORCID · unresolved

Domains — the database's venue-derived domains; a paper can count in several

Systems, architecture and hardware · 1

Expertise — from the expertise taxonomy: the topics of the expert's papers under the CCF categories. A weight counts papers with recency: 1 for a paper about the topic, 0.3 when the topic is its context, halved every five years.

Interdisciplinary, comprehensive, and emerging computing
1 paper
Bioinformatics and computational biology · 100%
Computer architecture, parallel and distributed computing, and storage systems
1 paper
Integrated circuit design · 100%

Topics — the 3 heaviest of 3, each with the papers that count most for it

TopicWeightPapersLastEvidence papers
Bioinformatics and computational biology › systems biology
biochemical simulation
0.112011
Biochemical oscillator sensitivity analysis in the presence of conservation constraints · DAC 2011
Integrated circuit design › analog and mixed-signal circuits
analog circuit design
0.012011
Biochemical oscillator sensitivity analysis in the presence of conservation constraints · DAC 2011
Integrated circuit design › radio-frequency circuit design
phase noise
0.012011
Biochemical oscillator sensitivity analysis in the presence of conservation constraints · DAC 2011

Methods — techniques the papers use, named apart from their topics

parametric sensitivity analysis · 0.2monodromy matrix analysis · 0.2
YearPublicationVenuePosition
2011 Biochemical oscillator sensitivity analysis in the presence of conservation constraints
abstract
Computing parametric sensitivities for oscillators has a now well-understood subtlety associated with the indeterminacy of phase. A less universal, but still vexing, subtlety arises when an oscillator is described by a system of differential equations with "hidden" conservation constraints (HCC's); defined as weighted sums of state variables that are time-invariant. If there are HCC's, as is commonly the case for models of biochemical oscillators but rarely the case for practical circuit oscillators, the now-standard approach to computing parametric sensitivities can yield incorrect results. In addition, the monodromy matrix (the matrix of state sensitivities over one oscillation period), is often defective in a way that interferes with the usual approach to computing oscillator phase noise. In this paper we analyze the HCC case, and show that by augmenting the standard sensitivity approach with explicit HCC's, one can recover the correct parametric sensitivities. In addition, we prove that there is a typically satisfied condition that guarantees that a system with HCCs will have a defective monodromy matrix. A deliberately "flawed" ring oscillator circuit and a cyanobacterial circadian clock biochemical oscillator are used to demonstrate the parametric sensitivity problem and its resolution, and to show the issue of the defective monodromy matrix.
Jared E. Toettcher, Anya Castillo, Bruce Tidor, Jacob K. White 0001
DAC2