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Richard A. Young

dblp:97/2425 · DBLP profile ↗
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6ranked-venue papers
0as first author
2since 2021 · last 2022
—ORCID · conflict

Domains — the database's venue-derived domains; a paper can count in several

Artificial intelligence and machine learning · 3 · 2 since 2021Applied, interdisciplinary, general and emerging computing · 3Systems, architecture and hardware · 1Databases, data management, data science and information retrieval · 1 · 1 since 2021Graphics, computer vision, multimedia, augmented reality and games · 1

Expertise — from the expertise taxonomy: the topics of the expert's papers under the CCF categories. A weight counts papers with recency: 1 for a paper about the topic, 0.3 when the topic is its context, halved every five years.

Interdisciplinary, comprehensive, and emerging computing
2 papers
Bioinformatics and computational biology · 100%
Computer graphics and multimedia
1 paper
Image and video coding · 100%

Topics — the 7 heaviest of 7, each with the papers that count most for it

TopicWeightPapersLastEvidence papers
Bioinformatics and computational biology › sequence analysis
motif discovery
0.112006
A hypothesis-based approach for identifying the binding specificity of regulatory proteins from chromatin immunoprecipitation data · Bioinform. 2006
Bioinformatics and computational biology › gene regulation
regulatory genomics
0.112006
A hypothesis-based approach for identifying the binding specificity of regulatory proteins from chromatin immunoprecipitation data · Bioinform. 2006
Bioinformatics and computational biology › gene regulation
transcription factor binding site prediction
0.112006
A hypothesis-based approach for identifying the binding specificity of regulatory proteins from chromatin immunoprecipitation data · Bioinform. 2006
Bioinformatics and computational biology
gene expression analysis
0.012002
A bayesian approach to transcript estimation from gene array data: the BEAM technique · RECOMB 2002
Image and video coding
image compression
0.011998
A Gaussian derivative based version of JPEG for image compression and decompression · IEEE Trans. Image Process. 1998
Image and video coding
JPEG compression
0.011998
A Gaussian derivative based version of JPEG for image compression and decompression · IEEE Trans. Image Process. 1998
Bioinformatics and computational biology › epigenomics
ChIP-chip analysis
0.012006
A hypothesis-based approach for identifying the binding specificity of regulatory proteins from chromatin immunoprecipitation data · Bioinform. 2006

Methods — techniques the papers use, named apart from their topics

cross-validation · 0.1constrained local optimization · 0.1statistical modeling · 0.0bayesian inference · 0.0discrete cosine transform comparison · 0.0
YearPublicationVenuePosition
2022 Cloud-Based Real-Time Molecular Screening Platform with MolFormer
Brian M. Belgodere, Vijil Chenthamarakshan, Pierre L. Dognin, Toby Kurien, Igor Melnyk, Youssef Mroueh, Inkit Padhi, Mattia Rigotti, Jarret Ross, Yair Schiff, Richard A. Young
ECML/PKDD (6)12
2022 Image Captioning as an Assistive Technology: Lessons Learned from VizWiz 2020 Challenge
abstract
Image captioning has recently demonstrated impressive progress largely owing to the introduction of neural network algorithms trained on curated dataset like MS-COCO. Often work in this field is motivated by the promise of deployment of captioning systems in practical applications. However, the scarcity of data and contexts in many competition datasets renders the utility of systems trained on these datasets limited as an assistive technology in real-world settings, such as helping visually impaired people navigate and accomplish everyday tasks. This gap motivated the introduction of the novel VizWiz dataset, which consists of images taken by the visually impaired and captions that have useful, task-oriented information. In an attempt to help the machine learning computer vision field realize its promise of producing technologies that have positive social impact, the curators of the VizWiz dataset host several competitions, including one for image captioning. This work details the theory and engineering from our winning submission to the 2020 captioning competition. Our work provides a step towards improved assistive image captioning systems. This article appears in the special track on AI & Society.
Pierre L. Dognin, Igor Melnyk, Youssef Mroueh, Inkit Padhi, Mattia Rigotti, Jarret Ross, Yair Schiff, Richard A. Young, Brian M. Belgodere
J. Artif. Intell. Res.8
2019 Designing Digital Peer Assessment for Second Language Learning in Low Resource Learning Settings
abstract
In low-resource, over-burdened schools and learning centres, peer assessment systems promise significant practical and pedagogical benefits. Many of the these benefits have been realised in contexts like massive open online courses (MOOCs) and university classrooms which share a specific trait with low-resource schools: high learner-teacher ratios. However, the constraints and considerations for designing and deploying peer assessment systems in low-resource classrooms have not been well-researched and understood, especially for high school. In this paper, we present the design of a peer assessment system for second language learning (English as a Second Language) for high school learners in South Africa. We report findings from multiple studies investigating qualitative and quantitative aspects of peer review, as well as the contextual factors that influence the viability of peer assessment systems in these contexts.
Maletsabisa Molapo, Chane Simone Moodley, Ismail Yunus Akhalwaya, Toby Kurien, Jay Kloppenberg, Richard A. Young
L@S6
2006 A hypothesis-based approach for identifying the binding specificity of regulatory proteins from chromatin immunoprecipitation data
abstract
MOTIVATION: Genome-wide chromatin-immunoprecipitation (ChIP-chip) detects binding of transcriptional regulators to DNA in vivo at low resolution. Motif discovery algorithms can be used to discover sequence patterns in the bound regions that may be recognized by the immunoprecipitated protein. However, the discovered motifs often do not agree with the binding specificity of the protein, when it is known. RESULTS: We present a powerful approach to analyzing ChIP-chip data, called THEME, that tests hypotheses concerning the sequence specificity of a protein. Hypotheses are refined using constrained local optimization. Cross-validation provides a principled standard for selecting the optimal weighting of the hypothesis and the ChIP-chip data and for choosing the best refined hypothesis. We demonstrate how to derive hypotheses for proteins from 36 domain families. Using THEME together with these hypotheses, we analyze ChIP-chip datasets for 14 human and mouse proteins. In all the cases the identified motifs are consistent with the published data with regard to the binding specificity of the proteins.
Kenzie D. MacIsaac, D. Benjamin Gordon, Lena Nekludova, Duncan T. Odom, Joerg Schreiber, David K. Gifford, Richard A. Young, Ernest Fraenkel
Bioinform.7
2002 A bayesian approach to transcript estimation from gene array data: the BEAM technique
abstract
We present a new statistically optimal approach to estimate transcript levels and ratios from one or more gene array experiments. The Bayesian Estimation of Array Measurements (BEAM) technique uses a model of measurement noise and prior information to estimate biological expression levels. It provides a principled method to deal with negative expression level measurements, combine multiple measurements, and identify changes in expression level. BEAM is more flexible than existing techniques, because it does not assume a specific functional form for noise and prior models. Rather, it uses a more accurate noise model developed from experimental data, a process we illustrate here using Affymetrix yeast chips.
Ron O. Dror, Jonathan G. Murnick, Nicola J. Rinaldi, Voichita D. Marinescu, Ryan M. Rifkin, Richard A. Young
RECOMB6
1998 A Gaussian derivative based version of JPEG for image compression and decompression
abstract
The compression and decompression of continuous-tone images is important in document management and transmission systems. This paper considers an alternative image representation scheme, based on Gaussian derivatives, to the standard discrete cosine transformation (DCT), within a Joint Photographic Experts Group (JPEG) framework. Depending on the computer arithmetic hardware used, the approach developed might yield a compression/decompression technique twice as fast as the DCT and of (essentially) equal quality.
Alexander P. Morgan, Layne T. Watson, Richard A. Young
IEEE Trans. Image Process.3